[DATALAD RUNCMD] Compute IACAS/sub-0025458/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025458/ses-2/anat/sub-0025458_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025458/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025458/ses-2/label/catROI_sub-0025458_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/gQ/MD5E-s57832--054816f76082510a65fdfd88786ebe56.mat/MD5E-s57832--054816f76082510a65fdfd88786ebe56.mat

IACAS/sub-0025458/ses-2/label/catROI_sub-0025458_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/p0/MD5E-s189303--dd571c8f891a75e98b1cd8ee5a74601e.xml/MD5E-s189303--dd571c8f891a75e98b1cd8ee5a74601e.xml

IACAS/sub-0025458/ses-2/label/catROIs_sub-0025458_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/kV/MD5E-s120125--e71c5e4d234ef6925a6fb6b452de1820.mat/MD5E-s120125--e71c5e4d234ef6925a6fb6b452de1820.mat

IACAS/sub-0025458/ses-2/label/catROIs_sub-0025458_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/wx/MD5E-s332115--879f817d660c8276ad62e13fadba4d63.xml/MD5E-s332115--879f817d660c8276ad62e13fadba4d63.xml

IACAS/sub-0025458/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025458/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/0q/MD5E-s150382--20cd3cafe83d03f33ce2e27bfe00e79c.nii.gz/MD5E-s150382--20cd3cafe83d03f33ce2e27bfe00e79c.nii.gz

IACAS/sub-0025458/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025458/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/PX/MD5E-s167610--d567a9a6fcaebb23787b81d3252d494d.nii.gz/MD5E-s167610--d567a9a6fcaebb23787b81d3252d494d.nii.gz

IACAS/sub-0025458/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025458/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/W7/MD5E-s228218--8ee9b30cf5dab9e1ad7e38afb12ec370.nii.gz/MD5E-s228218--8ee9b30cf5dab9e1ad7e38afb12ec370.nii.gz

IACAS/sub-0025458/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025458/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/G5/MD5E-s252563--5b88867b340b9db09a16daef2f200580.nii.gz/MD5E-s252563--5b88867b340b9db09a16daef2f200580.nii.gz

IACAS/sub-0025458/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025458/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/pW/MD5E-s24447--8df4a712235baa4922705c3cc8a413aa.nii.gz/MD5E-s24447--8df4a712235baa4922705c3cc8a413aa.nii.gz

IACAS/sub-0025458/ses-2/mri/aal3_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025458/ses-2/mri/aal3_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/67/MD5E-s171177--372c58c2eb384dbd61f2eb346c985d56.nii.gz/MD5E-s171177--372c58c2eb384dbd61f2eb346c985d56.nii.gz

IACAS/sub-0025458/ses-2/mri/anatomy3_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025458/ses-2/mri/anatomy3_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/wJ/MD5E-s123731--8cba190ffed1856ea3527471c1a6e3c5.nii.gz/MD5E-s123731--8cba190ffed1856ea3527471c1a6e3c5.nii.gz

IACAS/sub-0025458/ses-2/mri/anon_misub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/6W/MD5E-s8682841--2908e88be39d2682f23b9de8da351ab1.nii.gz/MD5E-s8682841--2908e88be39d2682f23b9de8da351ab1.nii.gz

IACAS/sub-0025458/ses-2/mri/anon_msub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/36/MD5E-s10090544--ed581ce2c67d94ac33d6192163a2b1bc.nii.gz/MD5E-s10090544--ed581ce2c67d94ac33d6192163a2b1bc.nii.gz

IACAS/sub-0025458/ses-2/mri/cat_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/52/J7/MD5E-s93803--19c1cfcba24f169fa90c342c3f2484fb.nii.gz/MD5E-s93803--19c1cfcba24f169fa90c342c3f2484fb.nii.gz

IACAS/sub-0025458/ses-2/mri/cobra_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025458/ses-2/mri/cobra_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/F9/MD5E-s45472--9858fe6754f88b9aaf2afdba52db97d1.nii.gz/MD5E-s45472--9858fe6754f88b9aaf2afdba52db97d1.nii.gz

IACAS/sub-0025458/ses-2/mri/hammers_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025458/ses-2/mri/hammers_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/3J/MD5E-s134050--a8991886e5fa218e253bdcb48687dc34.nii.gz/MD5E-s134050--a8991886e5fa218e253bdcb48687dc34.nii.gz

IACAS/sub-0025458/ses-2/mri/ibsr_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025458/ses-2/mri/ibsr_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/2Z/MD5E-s141572--9f39228b854077a3f4b090e3f05b60a9.nii.gz/MD5E-s141572--9f39228b854077a3f4b090e3f05b60a9.nii.gz

IACAS/sub-0025458/ses-2/mri/it_sub-0025458_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7X/Qz/MD5E-s283--bb297ba4dd1a4415cd57c080431f7c3d.mat/MD5E-s283--bb297ba4dd1a4415cd57c080431f7c3d.mat

IACAS/sub-0025458/ses-2/mri/it_sub-0025458_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/fk/MD5E-s282--56db149a198a62b166e9953abeb0e773.mat/MD5E-s282--56db149a198a62b166e9953abeb0e773.mat

IACAS/sub-0025458/ses-2/mri/iy_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/jp/MD5E-s41111140--09195b3958e93675237828c11e38bd14.nii.gz/MD5E-s41111140--09195b3958e93675237828c11e38bd14.nii.gz

IACAS/sub-0025458/ses-2/mri/julichbrain_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025458/ses-2/mri/julichbrain_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/xg/MD5E-s178622--2fc6bf125bacdf8d9d2cd0ee38820fb2.nii.gz/MD5E-s178622--2fc6bf125bacdf8d9d2cd0ee38820fb2.nii.gz

IACAS/sub-0025458/ses-2/mri/lpba40_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

IACAS/sub-0025458/ses-2/mri/lpba40_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/XP/MD5E-s130940--e35edf1409e8b652d91255858fbc385a.nii.gz/MD5E-s130940--e35edf1409e8b652d91255858fbc385a.nii.gz

IACAS/sub-0025458/ses-2/mri/m0wp1sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/m0wp2sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/90/MD5E-s2369622--2c4ed007b7aef8e4857f629989b0582c.nii.gz/MD5E-s2369622--2c4ed007b7aef8e4857f629989b0582c.nii.gz

IACAS/sub-0025458/ses-2/mri/m0wp3sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/mori_sub-0025458_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IACAS/sub-0025458/ses-2/mri/mori_sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/mwp1sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z4/4F/MD5E-s2590097--1eee56dfde497037c6f7c2cc2a1de7df.nii.gz/MD5E-s2590097--1eee56dfde497037c6f7c2cc2a1de7df.nii.gz

IACAS/sub-0025458/ses-2/mri/mwp2sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/mwp3sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025458/ses-2/mri/neuromorphometrics_sub-0025458_ses-2_run-1_T1w.csv

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IACAS/sub-0025458/ses-2/mri/neuromorphometrics_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025458/ses-2/mri/p0sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025458/ses-2/mri/p1sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/p2sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/p3sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/rp1sub-0025458_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025458/ses-2/mri/rp2sub-0025458_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025458/ses-2/mri/rp3sub-0025458_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025458/ses-2/mri/t_sub-0025458_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025458/ses-2/mri/t_sub-0025458_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025458/ses-2/mri/thalamus_sub-0025458_ses-2_run-1_T1w.csv

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IACAS/sub-0025458/ses-2/mri/thalamus_sub-0025458_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025458/ses-2/mri/wj_sub-0025458_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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