[DATALAD RUNCMD] Compute IACAS/sub-0025465/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025465/ses-2/anat/sub-0025465_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025465/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025465/ses-2/label/catROI_sub-0025465_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/xk/MD5E-s58202--15cc1780e5ef101d8506ea7d7c654385.mat/MD5E-s58202--15cc1780e5ef101d8506ea7d7c654385.mat

IACAS/sub-0025465/ses-2/label/catROI_sub-0025465_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/2f/MD5E-s188631--68c52bdeb81da220ff57939f04cf7bca.xml/MD5E-s188631--68c52bdeb81da220ff57939f04cf7bca.xml

IACAS/sub-0025465/ses-2/label/catROIs_sub-0025465_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/GX/MD5E-s120114--7a7ecce6b725cda3961c3dff866d5051.mat/MD5E-s120114--7a7ecce6b725cda3961c3dff866d5051.mat

IACAS/sub-0025465/ses-2/label/catROIs_sub-0025465_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/J5/MD5E-s332130--ee19e5690db7c77a16484951d0bdecfc.xml/MD5E-s332130--ee19e5690db7c77a16484951d0bdecfc.xml

IACAS/sub-0025465/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025465/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/p5/MD5E-s176437--c10016a1ab8a401599cbcff7dafb3302.nii.gz/MD5E-s176437--c10016a1ab8a401599cbcff7dafb3302.nii.gz

IACAS/sub-0025465/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025465/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/zZ/MD5E-s199203--e87ed5e532bfdd1b249021ba56bd52c3.nii.gz/MD5E-s199203--e87ed5e532bfdd1b249021ba56bd52c3.nii.gz

IACAS/sub-0025465/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025465/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/9j/MD5E-s265518--3dbf665f492811f6b05e49f932b7c702.nii.gz/MD5E-s265518--3dbf665f492811f6b05e49f932b7c702.nii.gz

IACAS/sub-0025465/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025465/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/Fv/MD5E-s296578--6e46a420c7f4fb5e0c553de892770da7.nii.gz/MD5E-s296578--6e46a420c7f4fb5e0c553de892770da7.nii.gz

IACAS/sub-0025465/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025465_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025465/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/M7/MD5E-s27260--5bc33c4648923931631625fa928cc135.nii.gz/MD5E-s27260--5bc33c4648923931631625fa928cc135.nii.gz

IACAS/sub-0025465/ses-2/mri/aal3_sub-0025465_ses-2_run-1_T1w.csv

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IACAS/sub-0025465/ses-2/mri/aal3_sub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/XG/MD5E-s198226--a634300807e1fe0fa267eef239584ae3.nii.gz/MD5E-s198226--a634300807e1fe0fa267eef239584ae3.nii.gz

IACAS/sub-0025465/ses-2/mri/anatomy3_sub-0025465_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025465/ses-2/mri/anatomy3_sub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/0g/MD5E-s146735--db9a5d74adcf48d3a9533d1ace9a50c9.nii.gz/MD5E-s146735--db9a5d74adcf48d3a9533d1ace9a50c9.nii.gz

IACAS/sub-0025465/ses-2/mri/anon_misub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025465/ses-2/mri/anon_msub-0025465_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/FK/MD5E-s7458373--580a531ae695d8a6d739f8ff7cc8ad57.nii.gz/MD5E-s7458373--580a531ae695d8a6d739f8ff7cc8ad57.nii.gz

IACAS/sub-0025465/ses-2/mri/cat_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/cobra_sub-0025465_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025465/ses-2/mri/cobra_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/hammers_sub-0025465_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025465/ses-2/mri/hammers_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/ibsr_sub-0025465_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025465/ses-2/mri/ibsr_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/it_sub-0025465_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/ZK/MD5E-s284--6b4a88cf924458365ca3b2c7d6fccdac.mat/MD5E-s284--6b4a88cf924458365ca3b2c7d6fccdac.mat

IACAS/sub-0025465/ses-2/mri/it_sub-0025465_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/2p/MD5E-s285--fa0fb43e977362811deff888371d5d3b.mat/MD5E-s285--fa0fb43e977362811deff888371d5d3b.mat

IACAS/sub-0025465/ses-2/mri/iy_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/julichbrain_sub-0025465_ses-2_run-1_T1w.csv

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IACAS/sub-0025465/ses-2/mri/julichbrain_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/lpba40_sub-0025465_ses-2_run-1_T1w.csv

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IACAS/sub-0025465/ses-2/mri/lpba40_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/m0wp1sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/m0wp2sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/m0wp3sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/mori_sub-0025465_ses-2_run-1_T1w.csv

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IACAS/sub-0025465/ses-2/mri/mori_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/mwp1sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/mwp2sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/mwp3sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/neuromorphometrics_sub-0025465_ses-2_run-1_T1w.csv

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IACAS/sub-0025465/ses-2/mri/neuromorphometrics_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/p0sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/p1sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/p2sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/p3sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/rp1sub-0025465_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025465/ses-2/mri/rp2sub-0025465_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025465/ses-2/mri/rp3sub-0025465_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025465/ses-2/mri/t_sub-0025465_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025465/ses-2/mri/t_sub-0025465_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025465/ses-2/mri/thalamus_sub-0025465_ses-2_run-1_T1w.csv

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IACAS/sub-0025465/ses-2/mri/thalamus_sub-0025465_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025465/ses-2/mri/wj_sub-0025465_ses-2_run-1_T1w.nii.gz

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