[DATALAD RUNCMD] Compute IACAS/sub-0025460/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025460/ses-1/anat/sub-0025460_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025460/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025460/ses-1/label/catROI_sub-0025460_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/Qf/MD5E-s58119--f70a52c1987bc7c59500f3766cfd7e4c.mat/MD5E-s58119--f70a52c1987bc7c59500f3766cfd7e4c.mat

IACAS/sub-0025460/ses-1/label/catROI_sub-0025460_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/q1/MD5E-s188785--df95cf9f2e2fc34de0417bbacf8fd343.xml/MD5E-s188785--df95cf9f2e2fc34de0417bbacf8fd343.xml

IACAS/sub-0025460/ses-1/label/catROIs_sub-0025460_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/qf/MD5E-s120272--ac65b2c6c2b404562d8d4a7ee9bde691.mat/MD5E-s120272--ac65b2c6c2b404562d8d4a7ee9bde691.mat

IACAS/sub-0025460/ses-1/label/catROIs_sub-0025460_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/78/MD5E-s332104--d5b20c8889ef6a159c7e5f13b02ff063.xml/MD5E-s332104--d5b20c8889ef6a159c7e5f13b02ff063.xml

IACAS/sub-0025460/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025460/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pQ/m8/MD5E-s172949--4952dc1faba93348007b94467a2c0adf.nii.gz/MD5E-s172949--4952dc1faba93348007b94467a2c0adf.nii.gz

IACAS/sub-0025460/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025460/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/1X/MD5E-s195669--33c612345698862e0b9be8ea2998ade3.nii.gz/MD5E-s195669--33c612345698862e0b9be8ea2998ade3.nii.gz

IACAS/sub-0025460/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025460/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/G2/MD5E-s261981--46599016b1e04d59d120bb1b2e6cf3ff.nii.gz/MD5E-s261981--46599016b1e04d59d120bb1b2e6cf3ff.nii.gz

IACAS/sub-0025460/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025460/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025460_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fj/ZP/MD5E-s292715--9e2af923140fb1f5348310833b5c9c4b.nii.gz/MD5E-s292715--9e2af923140fb1f5348310833b5c9c4b.nii.gz

IACAS/sub-0025460/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025460/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025460_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Z/56/MD5E-s26395--25b38779f07237a4488c2ab9f708eb1e.nii.gz/MD5E-s26395--25b38779f07237a4488c2ab9f708eb1e.nii.gz

IACAS/sub-0025460/ses-1/mri/aal3_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025460/ses-1/mri/aal3_sub-0025460_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/J3/MD5E-s197458--2ff2e068b45bb02cadaee3b49a8491e7.nii.gz/MD5E-s197458--2ff2e068b45bb02cadaee3b49a8491e7.nii.gz

IACAS/sub-0025460/ses-1/mri/anatomy3_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025460/ses-1/mri/anatomy3_sub-0025460_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025460/ses-1/mri/anon_misub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/anon_msub-0025460_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/Q8/MD5E-s10610561--d458f81834f83014cb655eb2d8f51604.nii.gz/MD5E-s10610561--d458f81834f83014cb655eb2d8f51604.nii.gz

IACAS/sub-0025460/ses-1/mri/cat_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/cobra_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025460/ses-1/mri/cobra_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/hammers_sub-0025460_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025460/ses-1/mri/hammers_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/ibsr_sub-0025460_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025460/ses-1/mri/ibsr_sub-0025460_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/xq/Z1/MD5E-s163882--2eaba08822b43fc21df5758e18be3ad6.nii.gz/MD5E-s163882--2eaba08822b43fc21df5758e18be3ad6.nii.gz

IACAS/sub-0025460/ses-1/mri/it_sub-0025460_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/7Q/MD5E-s281--dbd019b32ab6bd975168a24d33dde324.mat/MD5E-s281--dbd019b32ab6bd975168a24d33dde324.mat

IACAS/sub-0025460/ses-1/mri/it_sub-0025460_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/P2/MD5E-s284--95b76685852402906e9f408711958db4.mat/MD5E-s284--95b76685852402906e9f408711958db4.mat

IACAS/sub-0025460/ses-1/mri/iy_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/julichbrain_sub-0025460_ses-1_run-1_T1w.csv

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IACAS/sub-0025460/ses-1/mri/julichbrain_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/lpba40_sub-0025460_ses-1_run-1_T1w.csv

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IACAS/sub-0025460/ses-1/mri/lpba40_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/m0wp1sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/m0wp2sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/m0wp3sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/mori_sub-0025460_ses-1_run-1_T1w.csv

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IACAS/sub-0025460/ses-1/mri/mori_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/mwp1sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/mwp2sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/mwp3sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/neuromorphometrics_sub-0025460_ses-1_run-1_T1w.csv

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IACAS/sub-0025460/ses-1/mri/neuromorphometrics_sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/p0sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/p1sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/p2sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/p3sub-0025460_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025460/ses-1/mri/rp1sub-0025460_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025460/ses-1/mri/rp2sub-0025460_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025460/ses-1/mri/rp3sub-0025460_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025460/ses-1/mri/t_sub-0025460_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025460/ses-1/mri/t_sub-0025460_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025460/ses-1/mri/thalamus_sub-0025460_ses-1_run-1_T1w.csv

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IACAS/sub-0025460/ses-1/mri/thalamus_sub-0025460_ses-1_run-1_T1w.nii.gz

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