[DATALAD RUNCMD] Compute LMU_3/sub-0025414/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025414/ses-2/anat/sub-0025414_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025414/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025414/ses-2/label/catROI_sub-0025414_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/2Q/MD5E-s61400--927905421cebb724843deed7e51bb41d.mat/MD5E-s61400--927905421cebb724843deed7e51bb41d.mat

LMU_3/sub-0025414/ses-2/label/catROI_sub-0025414_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/gw/MD5E-s189524--cc6fd957172f694e5c8ef2048fb93d53.xml/MD5E-s189524--cc6fd957172f694e5c8ef2048fb93d53.xml

LMU_3/sub-0025414/ses-2/label/catROIs_sub-0025414_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/Gx/MD5E-s120124--2e58664e965d26688c47802084fb480b.mat/MD5E-s120124--2e58664e965d26688c47802084fb480b.mat

LMU_3/sub-0025414/ses-2/label/catROIs_sub-0025414_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/0X/MD5E-s332197--4cd643fa6963b283c523249fe8aacddf.xml/MD5E-s332197--4cd643fa6963b283c523249fe8aacddf.xml

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/gg/MD5E-s159450--d649de0e27f2f18959cd184d172cf5b1.nii.gz/MD5E-s159450--d649de0e27f2f18959cd184d172cf5b1.nii.gz

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/WG/MD5E-s178464--025d556ca319a1bf04f0dfc3b535f243.nii.gz/MD5E-s178464--025d556ca319a1bf04f0dfc3b535f243.nii.gz

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/xW/MD5E-s240749--be9b9c678d4b8546b7f312f89ec65ba2.nii.gz/MD5E-s240749--be9b9c678d4b8546b7f312f89ec65ba2.nii.gz

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025414/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/Gf/MD5E-s267394--011baa1721d90acc9367eb3f960c6370.nii.gz/MD5E-s267394--011baa1721d90acc9367eb3f960c6370.nii.gz

LMU_3/sub-0025414/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025414/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/vv/MD5E-s22401--d9a5d047b8efc2cb5acf8453ae6cf3d0.nii.gz/MD5E-s22401--d9a5d047b8efc2cb5acf8453ae6cf3d0.nii.gz

LMU_3/sub-0025414/ses-2/mri/aal3_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025414/ses-2/mri/aal3_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/Gk/MD5E-s183309--956f533b2c0ce574dcac0aa31565c050.nii.gz/MD5E-s183309--956f533b2c0ce574dcac0aa31565c050.nii.gz

LMU_3/sub-0025414/ses-2/mri/anatomy3_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025414/ses-2/mri/anatomy3_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/0M/MD5E-s127904--c6eecc17c2b29f9d614aefb1d8c71e95.nii.gz/MD5E-s127904--c6eecc17c2b29f9d614aefb1d8c71e95.nii.gz

LMU_3/sub-0025414/ses-2/mri/anon_misub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/Km/MD5E-s11845958--2458834600ef937aec6e866ef40dd474.nii.gz/MD5E-s11845958--2458834600ef937aec6e866ef40dd474.nii.gz

LMU_3/sub-0025414/ses-2/mri/anon_msub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/Fv/MD5E-s12337431--baf035711929263974bdeed628502c29.nii.gz/MD5E-s12337431--baf035711929263974bdeed628502c29.nii.gz

LMU_3/sub-0025414/ses-2/mri/cat_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z8/X3/MD5E-s108801--f7b5ade67d8e6c902fc652b777f6118c.nii.gz/MD5E-s108801--f7b5ade67d8e6c902fc652b777f6118c.nii.gz

LMU_3/sub-0025414/ses-2/mri/cobra_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025414/ses-2/mri/cobra_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/JV/MD5E-s44000--bc9d3a55d7971cf7b4943f1b561d2a12.nii.gz/MD5E-s44000--bc9d3a55d7971cf7b4943f1b561d2a12.nii.gz

LMU_3/sub-0025414/ses-2/mri/hammers_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025414/ses-2/mri/hammers_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/fQ/MD5E-s143222--c486d92e3130a70422a962bef524d4fd.nii.gz/MD5E-s143222--c486d92e3130a70422a962bef524d4fd.nii.gz

LMU_3/sub-0025414/ses-2/mri/ibsr_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025414/ses-2/mri/ibsr_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/q5/MD5E-s151130--609ebf6e1443eaf12cab077db4767a9a.nii.gz/MD5E-s151130--609ebf6e1443eaf12cab077db4767a9a.nii.gz

LMU_3/sub-0025414/ses-2/mri/it_sub-0025414_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/qP/MD5E-s283--0adc22bd6f45ab923932d7e01ef9dc2b.mat/MD5E-s283--0adc22bd6f45ab923932d7e01ef9dc2b.mat

LMU_3/sub-0025414/ses-2/mri/it_sub-0025414_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/PX/MD5E-s283--5878c7bb42c89007f403d0573574596a.mat/MD5E-s283--5878c7bb42c89007f403d0573574596a.mat

LMU_3/sub-0025414/ses-2/mri/iy_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/2z/MD5E-s45055439--d55627f2d4c98aa599d5b4d33cd5c8be.nii.gz/MD5E-s45055439--d55627f2d4c98aa599d5b4d33cd5c8be.nii.gz

LMU_3/sub-0025414/ses-2/mri/julichbrain_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025414/ses-2/mri/julichbrain_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/3j/MD5E-s190810--03526064f663b59bfc2f7f4a654d4d80.nii.gz/MD5E-s190810--03526064f663b59bfc2f7f4a654d4d80.nii.gz

LMU_3/sub-0025414/ses-2/mri/lpba40_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025414/ses-2/mri/lpba40_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/6m/MD5E-s139895--f0039cdb3317cd5d16d36d637a3834a4.nii.gz/MD5E-s139895--f0039cdb3317cd5d16d36d637a3834a4.nii.gz

LMU_3/sub-0025414/ses-2/mri/m0wp1sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/w1/MD5E-s2617591--8f29b4aee5bbbcaadc196520bfd8ebc2.nii.gz/MD5E-s2617591--8f29b4aee5bbbcaadc196520bfd8ebc2.nii.gz

LMU_3/sub-0025414/ses-2/mri/m0wp2sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/4V/MD5E-s2328960--d37839fc3717d0ff9e99f0a8876d69b4.nii.gz/MD5E-s2328960--d37839fc3717d0ff9e99f0a8876d69b4.nii.gz

LMU_3/sub-0025414/ses-2/mri/m0wp3sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/G8/MD5E-s2756845--3f1fadfdccf9468520d3133431e08fc1.nii.gz/MD5E-s2756845--3f1fadfdccf9468520d3133431e08fc1.nii.gz

LMU_3/sub-0025414/ses-2/mri/mori_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025414/ses-2/mri/mori_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zk/q5/MD5E-s169992--3dc9930c1bf4e2b91ff0a8e8fcf927b5.nii.gz/MD5E-s169992--3dc9930c1bf4e2b91ff0a8e8fcf927b5.nii.gz

LMU_3/sub-0025414/ses-2/mri/mwp1sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025414/ses-2/mri/mwp2sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/xX/MD5E-s2335133--64900f64a05f309969c0b9e16f439d72.nii.gz/MD5E-s2335133--64900f64a05f309969c0b9e16f439d72.nii.gz

LMU_3/sub-0025414/ses-2/mri/mwp3sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025414/ses-2/mri/neuromorphometrics_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025414/ses-2/mri/neuromorphometrics_sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/qw/MD5E-s192975--f098e314bd1df70ed34a5f3f97f1f5ac.nii.gz/MD5E-s192975--f098e314bd1df70ed34a5f3f97f1f5ac.nii.gz

LMU_3/sub-0025414/ses-2/mri/p0sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/fQ/MD5E-s661236--ed4dff20653dc1604fc6f42d09c8921b.nii.gz/MD5E-s661236--ed4dff20653dc1604fc6f42d09c8921b.nii.gz

LMU_3/sub-0025414/ses-2/mri/p1sub-0025414_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5g/K5/MD5E-s679785--87ad1479936d0ffe47217ecec659e763.nii.gz/MD5E-s679785--87ad1479936d0ffe47217ecec659e763.nii.gz

LMU_3/sub-0025414/ses-2/mri/p2sub-0025414_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025414/ses-2/mri/p3sub-0025414_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025414/ses-2/mri/rp1sub-0025414_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025414/ses-2/mri/rp2sub-0025414_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025414/ses-2/mri/rp3sub-0025414_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025414/ses-2/mri/t_sub-0025414_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/Mm/MD5E-s281--8435d90864a7c805a414ddbd1b9059cf.mat/MD5E-s281--8435d90864a7c805a414ddbd1b9059cf.mat

LMU_3/sub-0025414/ses-2/mri/t_sub-0025414_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mg/v8/MD5E-s283--c69b3606ff9d565defef1c2aa1d7ff44.mat/MD5E-s283--c69b3606ff9d565defef1c2aa1d7ff44.mat

LMU_3/sub-0025414/ses-2/mri/thalamus_sub-0025414_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025414/ses-2/mri/thalamus_sub-0025414_ses-2_run-1_T1w.nii.gz

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