[DATALAD RUNCMD] Compute BNU_2/sub-0025933/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025933/ses-2/anat/sub-0025933_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025933/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025933/ses-2/label/catROI_sub-0025933_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/6x/MD5E-s58073--1fccdffcb1a8c6e61afa68dc9a7274f9.mat/MD5E-s58073--1fccdffcb1a8c6e61afa68dc9a7274f9.mat

BNU_2/sub-0025933/ses-2/label/catROI_sub-0025933_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/9j/MD5E-s188810--857d6a411ac340bc0e6346cff5adb3be.xml/MD5E-s188810--857d6a411ac340bc0e6346cff5adb3be.xml

BNU_2/sub-0025933/ses-2/label/catROIs_sub-0025933_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/W2/MD5E-s120229--30c9f6a2df8721ffff2e7a227023c83d.mat/MD5E-s120229--30c9f6a2df8721ffff2e7a227023c83d.mat

BNU_2/sub-0025933/ses-2/label/catROIs_sub-0025933_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/03/wf/MD5E-s332196--32522f004795f784f08d7b93e77d82ae.xml/MD5E-s332196--32522f004795f784f08d7b93e77d82ae.xml

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/kp/MD5E-s165667--439ebad836969cce82b75f2ca018e5a3.nii.gz/MD5E-s165667--439ebad836969cce82b75f2ca018e5a3.nii.gz

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zJ/3w/MD5E-s184758--b9836dba054cd233f099bae1fb7c03e0.nii.gz/MD5E-s184758--b9836dba054cd233f099bae1fb7c03e0.nii.gz

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/Ff/MD5E-s249798--9a1d33ba86a5a085bcbf6220de929019.nii.gz/MD5E-s249798--9a1d33ba86a5a085bcbf6220de929019.nii.gz

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025933/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/9W/MD5E-s275615--cbdda1817a2692653651e617b2bab6b8.nii.gz/MD5E-s275615--cbdda1817a2692653651e617b2bab6b8.nii.gz

BNU_2/sub-0025933/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025933/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xj/9G/MD5E-s24810--295310974642dda87075a3766c237367.nii.gz/MD5E-s24810--295310974642dda87075a3766c237367.nii.gz

BNU_2/sub-0025933/ses-2/mri/aal3_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025933/ses-2/mri/aal3_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PQ/wF/MD5E-s186847--fd9ebf026dabe5d791e9f23d6e7bf00d.nii.gz/MD5E-s186847--fd9ebf026dabe5d791e9f23d6e7bf00d.nii.gz

BNU_2/sub-0025933/ses-2/mri/anatomy3_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025933/ses-2/mri/anatomy3_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/fJ/MD5E-s135278--cfb7ede965150fdf552dbb49d001a1a3.nii.gz/MD5E-s135278--cfb7ede965150fdf552dbb49d001a1a3.nii.gz

BNU_2/sub-0025933/ses-2/mri/anon_misub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/Kg/MD5E-s4638525--3740ebc31772696065d972079423b6b2.nii.gz/MD5E-s4638525--3740ebc31772696065d972079423b6b2.nii.gz

BNU_2/sub-0025933/ses-2/mri/anon_msub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/Qw/MD5E-s10787546--7fc89bafada9d387880adbd06ee01b20.nii.gz/MD5E-s10787546--7fc89bafada9d387880adbd06ee01b20.nii.gz

BNU_2/sub-0025933/ses-2/mri/cat_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/Vj/MD5E-s101541--6b37452f8fbd227a9f1bd5e586488fdd.nii.gz/MD5E-s101541--6b37452f8fbd227a9f1bd5e586488fdd.nii.gz

BNU_2/sub-0025933/ses-2/mri/cobra_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025933/ses-2/mri/cobra_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/01/MD5E-s47454--36d26cb262517f4a22a3a799fc5574c9.nii.gz/MD5E-s47454--36d26cb262517f4a22a3a799fc5574c9.nii.gz

BNU_2/sub-0025933/ses-2/mri/hammers_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025933/ses-2/mri/hammers_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/4W/MD5E-s146785--5b36a154f3a69e9903ec76519a94fd1f.nii.gz/MD5E-s146785--5b36a154f3a69e9903ec76519a94fd1f.nii.gz

BNU_2/sub-0025933/ses-2/mri/ibsr_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025933/ses-2/mri/ibsr_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/qZ/MD5E-s155062--7ec041403c13ac4816a8fffeff9ee773.nii.gz/MD5E-s155062--7ec041403c13ac4816a8fffeff9ee773.nii.gz

BNU_2/sub-0025933/ses-2/mri/it_sub-0025933_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/pj/MD5E-s283--e65937b0d0b123936f0f99e4349b7156.mat/MD5E-s283--e65937b0d0b123936f0f99e4349b7156.mat

BNU_2/sub-0025933/ses-2/mri/it_sub-0025933_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/2w/MD5E-s282--3b6e6625495b4e34232edce1798ac79b.mat/MD5E-s282--3b6e6625495b4e34232edce1798ac79b.mat

BNU_2/sub-0025933/ses-2/mri/iy_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/92/gG/MD5E-s48601351--3ae5429b500d618b9576ab44da9656e2.nii.gz/MD5E-s48601351--3ae5429b500d618b9576ab44da9656e2.nii.gz

BNU_2/sub-0025933/ses-2/mri/julichbrain_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025933/ses-2/mri/julichbrain_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/z3/MD5E-s197812--bf60a2b9bbd147e202ce2d73c0e4a2ba.nii.gz/MD5E-s197812--bf60a2b9bbd147e202ce2d73c0e4a2ba.nii.gz

BNU_2/sub-0025933/ses-2/mri/lpba40_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025933/ses-2/mri/lpba40_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/q1/MD5E-s143317--3837690082ec0ad2fbb9d22e759cebfb.nii.gz/MD5E-s143317--3837690082ec0ad2fbb9d22e759cebfb.nii.gz

BNU_2/sub-0025933/ses-2/mri/m0wp1sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/wP/MD5E-s2596070--6a89045399e506da6b248022c3e18a07.nii.gz/MD5E-s2596070--6a89045399e506da6b248022c3e18a07.nii.gz

BNU_2/sub-0025933/ses-2/mri/m0wp2sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/8M/MD5E-s2292526--1494d5ef28361cc50ba984bf6b814521.nii.gz/MD5E-s2292526--1494d5ef28361cc50ba984bf6b814521.nii.gz

BNU_2/sub-0025933/ses-2/mri/m0wp3sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/Wq/MD5E-s2478078--14f24daf152fabae2bb9c5c5c328c37b.nii.gz/MD5E-s2478078--14f24daf152fabae2bb9c5c5c328c37b.nii.gz

BNU_2/sub-0025933/ses-2/mri/mori_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025933/ses-2/mri/mori_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/1J/MD5E-s173300--919932a3a80cfc12c96b20bb7ce6e31b.nii.gz/MD5E-s173300--919932a3a80cfc12c96b20bb7ce6e31b.nii.gz

BNU_2/sub-0025933/ses-2/mri/mwp1sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/1g/MD5E-s2597924--7bf9ef1eeadff809de4057eb5cde1acb.nii.gz/MD5E-s2597924--7bf9ef1eeadff809de4057eb5cde1acb.nii.gz

BNU_2/sub-0025933/ses-2/mri/mwp2sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-2/mri/mwp3sub-0025933_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025933/ses-2/mri/neuromorphometrics_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025933/ses-2/mri/neuromorphometrics_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-2/mri/p0sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/kW/MD5E-s651784--d31a4c99a9261a5b31614fe63176af55.nii.gz/MD5E-s651784--d31a4c99a9261a5b31614fe63176af55.nii.gz

BNU_2/sub-0025933/ses-2/mri/p1sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-2/mri/p2sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-2/mri/p3sub-0025933_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025933/ses-2/mri/rp1sub-0025933_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025933/ses-2/mri/rp2sub-0025933_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025933/ses-2/mri/rp3sub-0025933_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025933/ses-2/mri/t_sub-0025933_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/1Q/MD5E-s282--ad560000ddd00a27d10518489e8dcfc9.mat/MD5E-s282--ad560000ddd00a27d10518489e8dcfc9.mat

BNU_2/sub-0025933/ses-2/mri/t_sub-0025933_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-2/mri/thalamus_sub-0025933_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-2/mri/thalamus_sub-0025933_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025933/ses-2/mri/wj_sub-0025933_ses-2_run-1_T1w.nii.gz

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