[DATALAD RUNCMD] Compute LMU_3/sub-0025407/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025407/ses-1/anat/sub-0025407_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025407/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025407/ses-1/label/catROI_sub-0025407_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J7/PX/MD5E-s57986--75825b972c4da872e3cd518ce99581a4.mat/MD5E-s57986--75825b972c4da872e3cd518ce99581a4.mat

LMU_3/sub-0025407/ses-1/label/catROI_sub-0025407_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/v6/MD5E-s189038--255b39fedc18b8768a4416b38d810d2a.xml/MD5E-s189038--255b39fedc18b8768a4416b38d810d2a.xml

LMU_3/sub-0025407/ses-1/label/catROIs_sub-0025407_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/8F/MD5E-s120146--6a4746388a03dd22b5b9af85fe1ac893.mat/MD5E-s120146--6a4746388a03dd22b5b9af85fe1ac893.mat

LMU_3/sub-0025407/ses-1/label/catROIs_sub-0025407_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/pG/MD5E-s332174--0dbe41473e99986b27c9ed607a7577a2.xml/MD5E-s332174--0dbe41473e99986b27c9ed607a7577a2.xml

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/Vf/MD5E-s168195--8ae3e13d3cd330f3c287047114c717cd.nii.gz/MD5E-s168195--8ae3e13d3cd330f3c287047114c717cd.nii.gz

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fx/jW/MD5E-s186011--e5ab869df64679d5cbe4dbcb521ab1a6.nii.gz/MD5E-s186011--e5ab869df64679d5cbe4dbcb521ab1a6.nii.gz

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/j5/MD5E-s251232--53548d5b7b475ae10387032eba1d73d8.nii.gz/MD5E-s251232--53548d5b7b475ae10387032eba1d73d8.nii.gz

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025407/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/fk/MD5E-s278237--ad8a22185afe9196c5e08e24011b4b8c.nii.gz/MD5E-s278237--ad8a22185afe9196c5e08e24011b4b8c.nii.gz

LMU_3/sub-0025407/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025407/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/8P/MD5E-s24159--2a73c1eaa5d4d8e4a19d1b02974bb8b4.nii.gz/MD5E-s24159--2a73c1eaa5d4d8e4a19d1b02974bb8b4.nii.gz

LMU_3/sub-0025407/ses-1/mri/aal3_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025407/ses-1/mri/aal3_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z5/v6/MD5E-s192788--bdce10444813696bca8444459f2ed532.nii.gz/MD5E-s192788--bdce10444813696bca8444459f2ed532.nii.gz

LMU_3/sub-0025407/ses-1/mri/anatomy3_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025407/ses-1/mri/anatomy3_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/Q5/MD5E-s136133--61cbd951bee0a769a6a821eaecf0777c.nii.gz/MD5E-s136133--61cbd951bee0a769a6a821eaecf0777c.nii.gz

LMU_3/sub-0025407/ses-1/mri/anon_misub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/pj/MD5E-s8911859--d604a15ff41efc4c6b3200eb4cd9ff4c.nii.gz/MD5E-s8911859--d604a15ff41efc4c6b3200eb4cd9ff4c.nii.gz

LMU_3/sub-0025407/ses-1/mri/anon_msub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/P7/MD5E-s9404375--50d82aadfd49be822c0fcc18c68d98d3.nii.gz/MD5E-s9404375--50d82aadfd49be822c0fcc18c68d98d3.nii.gz

LMU_3/sub-0025407/ses-1/mri/cat_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/4V/MD5E-s111682--8622f205a3cf1eeabbc610b84b9beddc.nii.gz/MD5E-s111682--8622f205a3cf1eeabbc610b84b9beddc.nii.gz

LMU_3/sub-0025407/ses-1/mri/cobra_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025407/ses-1/mri/cobra_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/5K/MD5E-s47731--328eb0b7c2f78b4497c0d5fe08b6a5c4.nii.gz/MD5E-s47731--328eb0b7c2f78b4497c0d5fe08b6a5c4.nii.gz

LMU_3/sub-0025407/ses-1/mri/hammers_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025407/ses-1/mri/hammers_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/19/MD5E-s150379--ca6e284c9f38028a29c8010ab4ae3521.nii.gz/MD5E-s150379--ca6e284c9f38028a29c8010ab4ae3521.nii.gz

LMU_3/sub-0025407/ses-1/mri/ibsr_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025407/ses-1/mri/ibsr_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/99/MD5E-s159382--f58c70c29e60587165e66b1405eae068.nii.gz/MD5E-s159382--f58c70c29e60587165e66b1405eae068.nii.gz

LMU_3/sub-0025407/ses-1/mri/it_sub-0025407_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/X2/MD5E-s282--512aa26ce291ee6615cc88695dc24644.mat/MD5E-s282--512aa26ce291ee6615cc88695dc24644.mat

LMU_3/sub-0025407/ses-1/mri/it_sub-0025407_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/qQ/MD5E-s282--0a99688871351bf69ad11bfdfec123ec.mat/MD5E-s282--0a99688871351bf69ad11bfdfec123ec.mat

LMU_3/sub-0025407/ses-1/mri/iy_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/V3/MD5E-s48159257--be46884c23a63f8c37a41a1427b668c0.nii.gz/MD5E-s48159257--be46884c23a63f8c37a41a1427b668c0.nii.gz

LMU_3/sub-0025407/ses-1/mri/julichbrain_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025407/ses-1/mri/julichbrain_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g9/f1/MD5E-s202092--edd072d83f76daa2853c93a65965a6c5.nii.gz/MD5E-s202092--edd072d83f76daa2853c93a65965a6c5.nii.gz

LMU_3/sub-0025407/ses-1/mri/lpba40_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025407/ses-1/mri/lpba40_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/Gv/MD5E-s146845--c3f5c05a4004cd3ef131aeed711bec94.nii.gz/MD5E-s146845--c3f5c05a4004cd3ef131aeed711bec94.nii.gz

LMU_3/sub-0025407/ses-1/mri/m0wp1sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/m0/MD5E-s2595670--fd58d96b8b181baf0bb0fc840ef3cfc0.nii.gz/MD5E-s2595670--fd58d96b8b181baf0bb0fc840ef3cfc0.nii.gz

LMU_3/sub-0025407/ses-1/mri/m0wp2sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/KJ/MD5E-s2311023--63ccf04bf6ca0c4c873547226469e4ce.nii.gz/MD5E-s2311023--63ccf04bf6ca0c4c873547226469e4ce.nii.gz

LMU_3/sub-0025407/ses-1/mri/m0wp3sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/76/MD5E-s2660589--fac1c3207df2501321d6f6048c9c21f7.nii.gz/MD5E-s2660589--fac1c3207df2501321d6f6048c9c21f7.nii.gz

LMU_3/sub-0025407/ses-1/mri/mori_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025407/ses-1/mri/mori_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/QG/MD5E-s179572--eb0df60452972a2c9a2e1932f12b6ed6.nii.gz/MD5E-s179572--eb0df60452972a2c9a2e1932f12b6ed6.nii.gz

LMU_3/sub-0025407/ses-1/mri/mwp1sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/Vz/MD5E-s2597438--df591137040a7385e2b2b92e64274d44.nii.gz/MD5E-s2597438--df591137040a7385e2b2b92e64274d44.nii.gz

LMU_3/sub-0025407/ses-1/mri/mwp2sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/Zq/MD5E-s2307369--2115b9a94bff813a15a2a2ee8e13b1a1.nii.gz/MD5E-s2307369--2115b9a94bff813a15a2a2ee8e13b1a1.nii.gz

LMU_3/sub-0025407/ses-1/mri/mwp3sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025407/ses-1/mri/neuromorphometrics_sub-0025407_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025407/ses-1/mri/neuromorphometrics_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025407/ses-1/mri/p0sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025407/ses-1/mri/p1sub-0025407_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025407/ses-1/mri/p2sub-0025407_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025407/ses-1/mri/p3sub-0025407_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025407/ses-1/mri/rp1sub-0025407_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025407/ses-1/mri/rp2sub-0025407_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025407/ses-1/mri/rp3sub-0025407_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025407/ses-1/mri/t_sub-0025407_ses-1_run-1_T1w_affine_reorient.mat

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LMU_3/sub-0025407/ses-1/mri/t_sub-0025407_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/ff/MD5E-s282--f5dcf153a9c1172944ceafe1ec6cdf53.mat/MD5E-s282--f5dcf153a9c1172944ceafe1ec6cdf53.mat

LMU_3/sub-0025407/ses-1/mri/thalamus_sub-0025407_ses-1_run-1_T1w.csv

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LMU_3/sub-0025407/ses-1/mri/thalamus_sub-0025407_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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