[DATALAD RUNCMD] Compute BNU_2/sub-0025939/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025939/ses-1/anat/sub-0025939_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025939/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025939/ses-1/label/catROI_sub-0025939_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/FP/MD5E-s57856--a39836c721922485773a66565c1d81db.mat/MD5E-s57856--a39836c721922485773a66565c1d81db.mat

BNU_2/sub-0025939/ses-1/label/catROI_sub-0025939_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/qM/MD5E-s189081--a1fb6de6a87fe9aa595fe94bb6c9945c.xml/MD5E-s189081--a1fb6de6a87fe9aa595fe94bb6c9945c.xml

BNU_2/sub-0025939/ses-1/label/catROIs_sub-0025939_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7q/9F/MD5E-s120011--ad72b1a7be4fe2bc2cf47da8777bfee6.mat/MD5E-s120011--ad72b1a7be4fe2bc2cf47da8777bfee6.mat

BNU_2/sub-0025939/ses-1/label/catROIs_sub-0025939_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/W1/MD5E-s332145--b10dd274b49cfc489601164a1e76ce2e.xml/MD5E-s332145--b10dd274b49cfc489601164a1e76ce2e.xml

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/09/MD5E-s139856--a87bb0d3f344fb3d487f02fd5da2d276.nii.gz/MD5E-s139856--a87bb0d3f344fb3d487f02fd5da2d276.nii.gz

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/X4/MD5E-s155607--291b21e46524199638b0ede772533945.nii.gz/MD5E-s155607--291b21e46524199638b0ede772533945.nii.gz

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/Gw/MD5E-s209045--6baea5513691dfe6c31fb3accac555a2.nii.gz/MD5E-s209045--6baea5513691dfe6c31fb3accac555a2.nii.gz

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025939/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/F7/MD5E-s230961--6af9b987cfb7811006cc8cb502c69558.nii.gz/MD5E-s230961--6af9b987cfb7811006cc8cb502c69558.nii.gz

BNU_2/sub-0025939/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025939/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/z0/MD5E-s19515--61d3f1631a7ab02ce5d549dc2f792d00.nii.gz/MD5E-s19515--61d3f1631a7ab02ce5d549dc2f792d00.nii.gz

BNU_2/sub-0025939/ses-1/mri/aal3_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025939/ses-1/mri/aal3_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6j/5g/MD5E-s159083--2b7d01886486f875c86b257cb00464ad.nii.gz/MD5E-s159083--2b7d01886486f875c86b257cb00464ad.nii.gz

BNU_2/sub-0025939/ses-1/mri/anatomy3_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025939/ses-1/mri/anatomy3_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/g0/MD5E-s111530--cadc03715e0a47b119b7c256009d7816.nii.gz/MD5E-s111530--cadc03715e0a47b119b7c256009d7816.nii.gz

BNU_2/sub-0025939/ses-1/mri/anon_misub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/qW/MD5E-s3777648--418b08a5336fff3b85575dbeda80eb77.nii.gz/MD5E-s3777648--418b08a5336fff3b85575dbeda80eb77.nii.gz

BNU_2/sub-0025939/ses-1/mri/anon_msub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/GF/MD5E-s6702269--40b7bbf73716f1596a164e6d445dc0fa.nii.gz/MD5E-s6702269--40b7bbf73716f1596a164e6d445dc0fa.nii.gz

BNU_2/sub-0025939/ses-1/mri/cat_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1z/5M/MD5E-s85847--648dd8f3dfab04f7597bd0843e79addb.nii.gz/MD5E-s85847--648dd8f3dfab04f7597bd0843e79addb.nii.gz

BNU_2/sub-0025939/ses-1/mri/cobra_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025939/ses-1/mri/cobra_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/8k/MD5E-s41486--de56729fd01c204ffaba56d3da6e3954.nii.gz/MD5E-s41486--de56729fd01c204ffaba56d3da6e3954.nii.gz

BNU_2/sub-0025939/ses-1/mri/hammers_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025939/ses-1/mri/hammers_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/4p/MD5E-s126696--44e71417d7cdafedd9a2aef5f8482f0f.nii.gz/MD5E-s126696--44e71417d7cdafedd9a2aef5f8482f0f.nii.gz

BNU_2/sub-0025939/ses-1/mri/ibsr_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025939/ses-1/mri/ibsr_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/MG/MD5E-s131637--41ad67082e259ee701b8c91c41e38744.nii.gz/MD5E-s131637--41ad67082e259ee701b8c91c41e38744.nii.gz

BNU_2/sub-0025939/ses-1/mri/it_sub-0025939_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/6M/MD5E-s283--5ec6eb5b82fdf5c57ec65b6c59d00a97.mat/MD5E-s283--5ec6eb5b82fdf5c57ec65b6c59d00a97.mat

BNU_2/sub-0025939/ses-1/mri/it_sub-0025939_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/Pg/MD5E-s284--5f96581676f0f3e4a357a8e33eea33fa.mat/MD5E-s284--5f96581676f0f3e4a357a8e33eea33fa.mat

BNU_2/sub-0025939/ses-1/mri/iy_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/ZJ/MD5E-s34352358--2c413c9cda6e3a7d1ece2712fd65e1c4.nii.gz/MD5E-s34352358--2c413c9cda6e3a7d1ece2712fd65e1c4.nii.gz

BNU_2/sub-0025939/ses-1/mri/julichbrain_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025939/ses-1/mri/julichbrain_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w4/v9/MD5E-s165974--d907d824b75740b9b8329fb729148bef.nii.gz/MD5E-s165974--d907d824b75740b9b8329fb729148bef.nii.gz

BNU_2/sub-0025939/ses-1/mri/lpba40_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025939/ses-1/mri/lpba40_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/2k/MD5E-s123322--378b62bcb17dc940e28b1a1acfdfd423.nii.gz/MD5E-s123322--378b62bcb17dc940e28b1a1acfdfd423.nii.gz

BNU_2/sub-0025939/ses-1/mri/m0wp1sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fX/2w/MD5E-s2585150--337b31aa5dd1216e5cbbee906bb42d26.nii.gz/MD5E-s2585150--337b31aa5dd1216e5cbbee906bb42d26.nii.gz

BNU_2/sub-0025939/ses-1/mri/m0wp2sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/xg/MD5E-s2289882--a03b47c0d15647f3be464a3dfc51188d.nii.gz/MD5E-s2289882--a03b47c0d15647f3be464a3dfc51188d.nii.gz

BNU_2/sub-0025939/ses-1/mri/m0wp3sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/xZ/MD5E-s2473492--3d5f9103946ba0209750db3f78534a88.nii.gz/MD5E-s2473492--3d5f9103946ba0209750db3f78534a88.nii.gz

BNU_2/sub-0025939/ses-1/mri/mori_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025939/ses-1/mri/mori_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8M/Jf/MD5E-s148812--9bd50c995bc789c1eb2cdd3b4e67c42a.nii.gz/MD5E-s148812--9bd50c995bc789c1eb2cdd3b4e67c42a.nii.gz

BNU_2/sub-0025939/ses-1/mri/mwp1sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/J1/MD5E-s2588907--da86db29ab14a563f47af966cb6fba43.nii.gz/MD5E-s2588907--da86db29ab14a563f47af966cb6fba43.nii.gz

BNU_2/sub-0025939/ses-1/mri/mwp2sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/6Q/MD5E-s2289208--1c81e43fbbb708467cffdebaf6e73802.nii.gz/MD5E-s2289208--1c81e43fbbb708467cffdebaf6e73802.nii.gz

BNU_2/sub-0025939/ses-1/mri/mwp3sub-0025939_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025939/ses-1/mri/neuromorphometrics_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025939/ses-1/mri/neuromorphometrics_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025939/ses-1/mri/p0sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/Qz/MD5E-s719583--dc09463332b4da35210a5f6a8e743fcc.nii.gz/MD5E-s719583--dc09463332b4da35210a5f6a8e743fcc.nii.gz

BNU_2/sub-0025939/ses-1/mri/p1sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/fg/MD5E-s734827--7b9db81be03d1f8ddda5b86aa6197856.nii.gz/MD5E-s734827--7b9db81be03d1f8ddda5b86aa6197856.nii.gz

BNU_2/sub-0025939/ses-1/mri/p2sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/Q3/MD5E-s497290--b01119d4ba0c479a4be4cd133fdf6588.nii.gz/MD5E-s497290--b01119d4ba0c479a4be4cd133fdf6588.nii.gz

BNU_2/sub-0025939/ses-1/mri/p3sub-0025939_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025939/ses-1/mri/rp1sub-0025939_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025939/ses-1/mri/rp2sub-0025939_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025939/ses-1/mri/rp3sub-0025939_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025939/ses-1/mri/t_sub-0025939_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/k8/MD5E-s283--65edc449ec7bdf03ba91fba5a8a6eb9c.mat/MD5E-s283--65edc449ec7bdf03ba91fba5a8a6eb9c.mat

BNU_2/sub-0025939/ses-1/mri/t_sub-0025939_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/1x/MD5E-s284--6e9b813442797c1b84d9e5514041260b.mat/MD5E-s284--6e9b813442797c1b84d9e5514041260b.mat

BNU_2/sub-0025939/ses-1/mri/thalamus_sub-0025939_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025939/ses-1/mri/thalamus_sub-0025939_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025939/ses-1/mri/wj_sub-0025939_ses-1_run-1_T1w.nii.gz

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