[DATALAD RUNCMD] Compute BNU_2/sub-0025977/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025977/ses-1/anat/sub-0025977_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025977/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025977/ses-1/label/catROI_sub-0025977_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/kK/MD5E-s57838--43d8ce34174532a2031b4caa58f19b71.mat/MD5E-s57838--43d8ce34174532a2031b4caa58f19b71.mat

BNU_2/sub-0025977/ses-1/label/catROI_sub-0025977_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/72/Z8/MD5E-s188848--e2710f2539a5b64a6067cea9352a7ecb.xml/MD5E-s188848--e2710f2539a5b64a6067cea9352a7ecb.xml

BNU_2/sub-0025977/ses-1/label/catROIs_sub-0025977_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/F4/MD5E-s120043--6b9890c63617f9788f8c0e7036e5ab1a.mat/MD5E-s120043--6b9890c63617f9788f8c0e7036e5ab1a.mat

BNU_2/sub-0025977/ses-1/label/catROIs_sub-0025977_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/gg/MD5E-s332150--a75c71cd035eb31ee2e96c597c6603e8.xml/MD5E-s332150--a75c71cd035eb31ee2e96c597c6603e8.xml

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/6P/MD5E-s138871--dc449db91ce20074a23096ccff1c88db.nii.gz/MD5E-s138871--dc449db91ce20074a23096ccff1c88db.nii.gz

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/kK/MD5E-s154210--3df24563e296dae7c2fb3ff6b93407ed.nii.gz/MD5E-s154210--3df24563e296dae7c2fb3ff6b93407ed.nii.gz

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/V0/MD5E-s207222--886dfa4e226b7c83154ec0651927dbda.nii.gz/MD5E-s207222--886dfa4e226b7c83154ec0651927dbda.nii.gz

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025977/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/Xg/MD5E-s228709--22183f841ac0cc81fc9e121822268f80.nii.gz/MD5E-s228709--22183f841ac0cc81fc9e121822268f80.nii.gz

BNU_2/sub-0025977/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025977/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/wz/MD5E-s18521--eb9f6b1ee738f2d6640aee355accb7ac.nii.gz/MD5E-s18521--eb9f6b1ee738f2d6640aee355accb7ac.nii.gz

BNU_2/sub-0025977/ses-1/mri/aal3_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025977/ses-1/mri/aal3_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/9g/MD5E-s155371--879641603218451b696f708e405d74d5.nii.gz/MD5E-s155371--879641603218451b696f708e405d74d5.nii.gz

BNU_2/sub-0025977/ses-1/mri/anatomy3_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025977/ses-1/mri/anatomy3_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/Qz/MD5E-s108641--38336a9a5b8537593a43c9f001c69f46.nii.gz/MD5E-s108641--38336a9a5b8537593a43c9f001c69f46.nii.gz

BNU_2/sub-0025977/ses-1/mri/anon_misub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/p8/MD5E-s3755628--bab6da55d9f3cf7838f44c1fb00d2a04.nii.gz/MD5E-s3755628--bab6da55d9f3cf7838f44c1fb00d2a04.nii.gz

BNU_2/sub-0025977/ses-1/mri/anon_msub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/Xw/MD5E-s9253611--d4eb01961cf5c8370a637e038c2ff4a7.nii.gz/MD5E-s9253611--d4eb01961cf5c8370a637e038c2ff4a7.nii.gz

BNU_2/sub-0025977/ses-1/mri/cat_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/g5/MD5E-s79597--617ccd445acb682db29102c5e17d3235.nii.gz/MD5E-s79597--617ccd445acb682db29102c5e17d3235.nii.gz

BNU_2/sub-0025977/ses-1/mri/cobra_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025977/ses-1/mri/cobra_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/g4/MD5E-s38268--58a373865f5542d8ad2201f77153fef9.nii.gz/MD5E-s38268--58a373865f5542d8ad2201f77153fef9.nii.gz

BNU_2/sub-0025977/ses-1/mri/hammers_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025977/ses-1/mri/hammers_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/MQ/MD5E-s121744--072e29d556f244bc0b3cc28a26483bf4.nii.gz/MD5E-s121744--072e29d556f244bc0b3cc28a26483bf4.nii.gz

BNU_2/sub-0025977/ses-1/mri/ibsr_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025977/ses-1/mri/ibsr_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/4f/MD5E-s127139--3fa0d8859ab37e9551b2731f8ac8657c.nii.gz/MD5E-s127139--3fa0d8859ab37e9551b2731f8ac8657c.nii.gz

BNU_2/sub-0025977/ses-1/mri/it_sub-0025977_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/V4/MD5E-s283--4f3e88405f01054237af6335fbbd73ce.mat/MD5E-s283--4f3e88405f01054237af6335fbbd73ce.mat

BNU_2/sub-0025977/ses-1/mri/it_sub-0025977_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/Qg/MD5E-s283--ef28e3d7decce2f4037cbb232eb6946a.mat/MD5E-s283--ef28e3d7decce2f4037cbb232eb6946a.mat

BNU_2/sub-0025977/ses-1/mri/iy_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/MP/MD5E-s32836044--3500dd3156ef847c66fcd738f36c9c02.nii.gz/MD5E-s32836044--3500dd3156ef847c66fcd738f36c9c02.nii.gz

BNU_2/sub-0025977/ses-1/mri/julichbrain_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025977/ses-1/mri/julichbrain_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/KK/MD5E-s163138--2b181b38fb5e91ee5fb3ad9ddda29a52.nii.gz/MD5E-s163138--2b181b38fb5e91ee5fb3ad9ddda29a52.nii.gz

BNU_2/sub-0025977/ses-1/mri/lpba40_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025977/ses-1/mri/lpba40_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W1/kq/MD5E-s118500--688370a3c2a6da4174e25e4707fdac13.nii.gz/MD5E-s118500--688370a3c2a6da4174e25e4707fdac13.nii.gz

BNU_2/sub-0025977/ses-1/mri/m0wp1sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/jX/MD5E-s2583981--dc20a1d93ce32b247c5815b01c83dbfb.nii.gz/MD5E-s2583981--dc20a1d93ce32b247c5815b01c83dbfb.nii.gz

BNU_2/sub-0025977/ses-1/mri/m0wp2sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/W3/MD5E-s2264144--9033f4fc13cfd6a7cd43cf45f0169576.nii.gz/MD5E-s2264144--9033f4fc13cfd6a7cd43cf45f0169576.nii.gz

BNU_2/sub-0025977/ses-1/mri/m0wp3sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qk/36/MD5E-s2422584--417c5ac2610bae651df5fc4d751f2fca.nii.gz/MD5E-s2422584--417c5ac2610bae651df5fc4d751f2fca.nii.gz

BNU_2/sub-0025977/ses-1/mri/mori_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025977/ses-1/mri/mori_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/Vw/MD5E-s144049--33e0ebe440b58744cc80658ef9db35ea.nii.gz/MD5E-s144049--33e0ebe440b58744cc80658ef9db35ea.nii.gz

BNU_2/sub-0025977/ses-1/mri/mwp1sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/z8/MD5E-s2589161--9788ac2a85e2546f8647d9abdda981ea.nii.gz/MD5E-s2589161--9788ac2a85e2546f8647d9abdda981ea.nii.gz

BNU_2/sub-0025977/ses-1/mri/mwp2sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mv/Mx/MD5E-s2261730--ff04d742edee5062fc9263bbeb172dfa.nii.gz/MD5E-s2261730--ff04d742edee5062fc9263bbeb172dfa.nii.gz

BNU_2/sub-0025977/ses-1/mri/mwp3sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/wk/MD5E-s2418978--7a26cb9c3a41941944d0ed497e62885e.nii.gz/MD5E-s2418978--7a26cb9c3a41941944d0ed497e62885e.nii.gz

BNU_2/sub-0025977/ses-1/mri/neuromorphometrics_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025977/ses-1/mri/neuromorphometrics_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025977/ses-1/mri/p0sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/1F/MD5E-s683214--efa8b665bc155fa16af23da12b478ff4.nii.gz/MD5E-s683214--efa8b665bc155fa16af23da12b478ff4.nii.gz

BNU_2/sub-0025977/ses-1/mri/p1sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/pf/MD5E-s699907--6fd2c9a168c9a40d654707c673290222.nii.gz/MD5E-s699907--6fd2c9a168c9a40d654707c673290222.nii.gz

BNU_2/sub-0025977/ses-1/mri/p2sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/54/MD5E-s479979--32032e28450828e45d65cc14a7752bbd.nii.gz/MD5E-s479979--32032e28450828e45d65cc14a7752bbd.nii.gz

BNU_2/sub-0025977/ses-1/mri/p3sub-0025977_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025977/ses-1/mri/rp1sub-0025977_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025977/ses-1/mri/rp2sub-0025977_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025977/ses-1/mri/rp3sub-0025977_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025977/ses-1/mri/t_sub-0025977_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/5p/MD5E-s284--3983b30d862728baf54952d69312d4b5.mat/MD5E-s284--3983b30d862728baf54952d69312d4b5.mat

BNU_2/sub-0025977/ses-1/mri/t_sub-0025977_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/KZ/MD5E-s284--a793499a105c37a6830e49f479d0c424.mat/MD5E-s284--a793499a105c37a6830e49f479d0c424.mat

BNU_2/sub-0025977/ses-1/mri/thalamus_sub-0025977_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025977/ses-1/mri/thalamus_sub-0025977_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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