[DATALAD RUNCMD] Compute BNU_2/sub-0025970/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025970/ses-2/anat/sub-0025970_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025970/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025970/ses-2/label/catROI_sub-0025970_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/17/MD5E-s57846--bf3330d140112de454fe8abcb323b27c.mat/MD5E-s57846--bf3330d140112de454fe8abcb323b27c.mat

BNU_2/sub-0025970/ses-2/label/catROI_sub-0025970_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/66/MD5E-s188658--81bf0826e2aba63bf57abe7c62288278.xml/MD5E-s188658--81bf0826e2aba63bf57abe7c62288278.xml

BNU_2/sub-0025970/ses-2/label/catROIs_sub-0025970_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/J5/MD5E-s120054--b47e8143ce7f661669e6becbd5512dc1.mat/MD5E-s120054--b47e8143ce7f661669e6becbd5512dc1.mat

BNU_2/sub-0025970/ses-2/label/catROIs_sub-0025970_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Z/Px/MD5E-s332158--3ad77e5fd41aa973edefc5d7bf4d972e.xml/MD5E-s332158--3ad77e5fd41aa973edefc5d7bf4d972e.xml

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/zG/MD5E-s163999--bc9898108190e783256713945845bd66.nii.gz/MD5E-s163999--bc9898108190e783256713945845bd66.nii.gz

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/9q/MD5E-s182687--edd561e30637d86fabf2602d7d7a304d.nii.gz/MD5E-s182687--edd561e30637d86fabf2602d7d7a304d.nii.gz

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/1W/MD5E-s248427--7d2bbec6639a1f1f603dc6c0eb407645.nii.gz/MD5E-s248427--7d2bbec6639a1f1f603dc6c0eb407645.nii.gz

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025970/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/8X/MD5E-s274500--91b3dde214f744b90678c462366b8eb7.nii.gz/MD5E-s274500--91b3dde214f744b90678c462366b8eb7.nii.gz

BNU_2/sub-0025970/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025970/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MV/PP/MD5E-s24429--69bb1a15db8b8d8553ac57bf6c09c50f.nii.gz/MD5E-s24429--69bb1a15db8b8d8553ac57bf6c09c50f.nii.gz

BNU_2/sub-0025970/ses-2/mri/aal3_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025970/ses-2/mri/aal3_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/Qg/MD5E-s184548--0eebf430849d6896e0c0fe83fd9bdcc2.nii.gz/MD5E-s184548--0eebf430849d6896e0c0fe83fd9bdcc2.nii.gz

BNU_2/sub-0025970/ses-2/mri/anatomy3_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025970/ses-2/mri/anatomy3_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/gf/MD5E-s134914--defed430f30b02fffe765f8c3aae46c7.nii.gz/MD5E-s134914--defed430f30b02fffe765f8c3aae46c7.nii.gz

BNU_2/sub-0025970/ses-2/mri/anon_misub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/M3/MD5E-s4438421--59449eb35789d3df412af5a928262d5d.nii.gz/MD5E-s4438421--59449eb35789d3df412af5a928262d5d.nii.gz

BNU_2/sub-0025970/ses-2/mri/anon_msub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/Xj/MD5E-s10617779--e25e3efa897eac6a7444eebc39a390fb.nii.gz/MD5E-s10617779--e25e3efa897eac6a7444eebc39a390fb.nii.gz

BNU_2/sub-0025970/ses-2/mri/cat_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/V7/MD5E-s96976--590c195e52a2192ef06e7456d72d0ef4.nii.gz/MD5E-s96976--590c195e52a2192ef06e7456d72d0ef4.nii.gz

BNU_2/sub-0025970/ses-2/mri/cobra_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025970/ses-2/mri/cobra_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/fQ/MD5E-s49083--1920c9d554393380ae188bffe95804f5.nii.gz/MD5E-s49083--1920c9d554393380ae188bffe95804f5.nii.gz

BNU_2/sub-0025970/ses-2/mri/hammers_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025970/ses-2/mri/hammers_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/X3/MD5E-s146317--068305bfb65f31d08ebbc7ad00857029.nii.gz/MD5E-s146317--068305bfb65f31d08ebbc7ad00857029.nii.gz

BNU_2/sub-0025970/ses-2/mri/ibsr_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025970/ses-2/mri/ibsr_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/2J/MD5E-s153521--e7347d9a43e898a992651bc9d7ccd819.nii.gz/MD5E-s153521--e7347d9a43e898a992651bc9d7ccd819.nii.gz

BNU_2/sub-0025970/ses-2/mri/it_sub-0025970_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/67/MD5E-s283--7102af9fbedc93624f957bf2b7b408e2.mat/MD5E-s283--7102af9fbedc93624f957bf2b7b408e2.mat

BNU_2/sub-0025970/ses-2/mri/it_sub-0025970_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/QZ/MD5E-s283--ed292ff5ce3e8e18cb3f0bb5f704a281.mat/MD5E-s283--ed292ff5ce3e8e18cb3f0bb5f704a281.mat

BNU_2/sub-0025970/ses-2/mri/iy_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/X6/MD5E-s46735281--a8a63260d9d68b1fb2ca50797ca9c2a0.nii.gz/MD5E-s46735281--a8a63260d9d68b1fb2ca50797ca9c2a0.nii.gz

BNU_2/sub-0025970/ses-2/mri/julichbrain_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025970/ses-2/mri/julichbrain_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/z8/MD5E-s197438--d8adde4fadb447239695c48e80eb6b38.nii.gz/MD5E-s197438--d8adde4fadb447239695c48e80eb6b38.nii.gz

BNU_2/sub-0025970/ses-2/mri/lpba40_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025970/ses-2/mri/lpba40_sub-0025970_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/j8/Pm/MD5E-s143458--d3e9e91675d51e5eac2d443baad20150.nii.gz/MD5E-s143458--d3e9e91675d51e5eac2d443baad20150.nii.gz

BNU_2/sub-0025970/ses-2/mri/m0wp1sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/FZ/MD5E-s2561510--1a96ea99f0f88cfc220e03a72aa38225.nii.gz/MD5E-s2561510--1a96ea99f0f88cfc220e03a72aa38225.nii.gz

BNU_2/sub-0025970/ses-2/mri/m0wp2sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/qf/MD5E-s2268909--232ac1c0c45043c561094f8479bf4d08.nii.gz/MD5E-s2268909--232ac1c0c45043c561094f8479bf4d08.nii.gz

BNU_2/sub-0025970/ses-2/mri/m0wp3sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/39/MD5E-s2414438--bef6a0cf492f978e9911f8e8e7532a33.nii.gz/MD5E-s2414438--bef6a0cf492f978e9911f8e8e7532a33.nii.gz

BNU_2/sub-0025970/ses-2/mri/mori_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025970/ses-2/mri/mori_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/2f/MD5E-s172146--67de2a019d8ff0e69fd51a8f02e2e373.nii.gz/MD5E-s172146--67de2a019d8ff0e69fd51a8f02e2e373.nii.gz

BNU_2/sub-0025970/ses-2/mri/mwp1sub-0025970_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025970/ses-2/mri/mwp2sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025970/ses-2/mri/mwp3sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025970/ses-2/mri/neuromorphometrics_sub-0025970_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025970/ses-2/mri/neuromorphometrics_sub-0025970_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025970/ses-2/mri/p0sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/Xz/MD5E-s598602--dd90cf76da38e812af843d2f505774ef.nii.gz/MD5E-s598602--dd90cf76da38e812af843d2f505774ef.nii.gz

BNU_2/sub-0025970/ses-2/mri/p1sub-0025970_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025970/ses-2/mri/p2sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025970/ses-2/mri/p3sub-0025970_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025970/ses-2/mri/rp1sub-0025970_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025970/ses-2/mri/rp2sub-0025970_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025970/ses-2/mri/rp3sub-0025970_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025970/ses-2/mri/t_sub-0025970_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025970/ses-2/mri/t_sub-0025970_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025970/ses-2/mri/thalamus_sub-0025970_ses-2_run-1_T1w.csv

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BNU_2/sub-0025970/ses-2/mri/thalamus_sub-0025970_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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