[DATALAD RUNCMD] Compute SWU_1/sub-0027222/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027222/ses-2/anat/sub-0027222_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027222/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027222/ses-2/label/catROI_sub-0027222_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/18/MD5E-s58627--3ea9f93b6477965abd5d476aa455194c.mat/MD5E-s58627--3ea9f93b6477965abd5d476aa455194c.mat

SWU_1/sub-0027222/ses-2/label/catROI_sub-0027222_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/Q5/MD5E-s188909--db98cecc045c47b37751c12d43f695f4.xml/MD5E-s188909--db98cecc045c47b37751c12d43f695f4.xml

SWU_1/sub-0027222/ses-2/label/catROI_sub-0027222_ses-2_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q2/ZM/MD5E-s61316--35e4009030d58a5e8e275d418b680043.mat/MD5E-s61316--35e4009030d58a5e8e275d418b680043.mat

SWU_1/sub-0027222/ses-2/label/catROI_sub-0027222_ses-2_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2Z/zx/MD5E-s188858--bd6f4609b633eedb126f3d161ae3e6e3.xml/MD5E-s188858--bd6f4609b633eedb126f3d161ae3e6e3.xml

SWU_1/sub-0027222/ses-2/label/catROIs_sub-0027222_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/g8/MD5E-s120075--dee64d3b8d1f9d0b739058b14e3f64fb.mat/MD5E-s120075--dee64d3b8d1f9d0b739058b14e3f64fb.mat

SWU_1/sub-0027222/ses-2/label/catROIs_sub-0027222_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/Mz/MD5E-s332148--fb1274f6e7b255f7611b6bb0bd453733.xml/MD5E-s332148--fb1274f6e7b255f7611b6bb0bd453733.xml

SWU_1/sub-0027222/ses-2/label/catROIs_sub-0027222_ses-2_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fX/vX/MD5E-s120085--17daf30fe13701bb1edf309bc5bad16e.mat/MD5E-s120085--17daf30fe13701bb1edf309bc5bad16e.mat

SWU_1/sub-0027222/ses-2/label/catROIs_sub-0027222_ses-2_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/34/xG/MD5E-s332075--2d15c4f7f6df0968fe5915684db7eecd.xml/MD5E-s332075--2d15c4f7f6df0968fe5915684db7eecd.xml

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/xF/MD5E-s173631--fc1c4b2fe2ff09a998935520f44a3399.nii.gz/MD5E-s173631--fc1c4b2fe2ff09a998935520f44a3399.nii.gz

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z7/Gf/MD5E-s174611--0be8d7ee634e14b78ba697cea00c842c.nii.gz/MD5E-s174611--0be8d7ee634e14b78ba697cea00c842c.nii.gz

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/Qf/MD5E-s193469--6d7109bdfe7eddbb1198fbf1adae7781.nii.gz/MD5E-s193469--6d7109bdfe7eddbb1198fbf1adae7781.nii.gz

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2x/58/MD5E-s194415--b5f50110d127692dacfa5dc62d820db7.nii.gz/MD5E-s194415--b5f50110d127692dacfa5dc62d820db7.nii.gz

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/M9/MD5E-s260945--0fd22be5971ffac44a221fc3ee702210.nii.gz/MD5E-s260945--0fd22be5971ffac44a221fc3ee702210.nii.gz

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q6/35/MD5E-s262872--3248e5118bee6ecef8ba6d796640cb4d.nii.gz/MD5E-s262872--3248e5118bee6ecef8ba6d796640cb4d.nii.gz

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/7v/MD5E-s288821--55c82774580502836d91279c522256b2.nii.gz/MD5E-s288821--55c82774580502836d91279c522256b2.nii.gz

SWU_1/sub-0027222/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J2/Pg/MD5E-s290347--c441b530ea79ed8b8583df021ed4450b.nii.gz/MD5E-s290347--c441b530ea79ed8b8583df021ed4450b.nii.gz

SWU_1/sub-0027222/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/x1/MD5E-s25434--beb822c1bbccd1e1dd7b312616ba2b7d.nii.gz/MD5E-s25434--beb822c1bbccd1e1dd7b312616ba2b7d.nii.gz

SWU_1/sub-0027222/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4v/fk/MD5E-s26336--099612b7abc6c3b4034305e9d6b449ae.nii.gz/MD5E-s26336--099612b7abc6c3b4034305e9d6b449ae.nii.gz

SWU_1/sub-0027222/ses-2/mri/aal3_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/19/MD5E-s195039--a9ca057df79d2b85009bfa72004a0c5c.nii.gz/MD5E-s195039--a9ca057df79d2b85009bfa72004a0c5c.nii.gz

SWU_1/sub-0027222/ses-2/mri/aal3_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wg/VM/MD5E-s196404--44b2130fdd3afb257bc2f49d30d25ae1.nii.gz/MD5E-s196404--44b2130fdd3afb257bc2f49d30d25ae1.nii.gz

SWU_1/sub-0027222/ses-2/mri/anatomy3_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027222/ses-2/mri/anatomy3_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X5/Zq/MD5E-s142962--891966d5a784950eb32796fb313e89b6.nii.gz/MD5E-s142962--891966d5a784950eb32796fb313e89b6.nii.gz

SWU_1/sub-0027222/ses-2/mri/anon_misub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027222/ses-2/mri/anon_misub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kz/v6/MD5E-s11891618--048580355de7059cad5ace06f2c5ca2c.nii.gz/MD5E-s11891618--048580355de7059cad5ace06f2c5ca2c.nii.gz

SWU_1/sub-0027222/ses-2/mri/anon_msub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/anon_msub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027222/ses-2/mri/cat_sub-0027222_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/Gz/MD5E-s107985--956f9601b386ac94e889cf23fd203a8b.nii.gz/MD5E-s107985--956f9601b386ac94e889cf23fd203a8b.nii.gz

SWU_1/sub-0027222/ses-2/mri/cat_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7m/02/MD5E-s108137--726d3f4af6cb1c5e364d57eddd64ec36.nii.gz/MD5E-s108137--726d3f4af6cb1c5e364d57eddd64ec36.nii.gz

SWU_1/sub-0027222/ses-2/mri/cobra_sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/cobra_sub-0027222_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027222/ses-2/mri/hammers_sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/hammers_sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/ibsr_sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/ibsr_sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/it_sub-0027222_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VJ/mq/MD5E-s282--d42ac2a4b0fb6f9fec81da4878a6ed03.mat/MD5E-s282--d42ac2a4b0fb6f9fec81da4878a6ed03.mat

SWU_1/sub-0027222/ses-2/mri/it_sub-0027222_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027222/ses-2/mri/it_sub-0027222_ses-2_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027222/ses-2/mri/it_sub-0027222_ses-2_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027222/ses-2/mri/iy_sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/iy_sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/julichbrain_sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/julichbrain_sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/lpba40_sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/lpba40_sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/m0wp1sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/m0wp1sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/m0wp2sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/m0wp2sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/m0wp3sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/m0wp3sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/mori_sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/mori_sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/mwp1sub-0027222_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/mwp1sub-0027222_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027222/ses-2/mri/mwp2sub-0027222_ses-2_run-1_T1w.nii.gz

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