[DATALAD RUNCMD] Compute JHNU/sub-0025627/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025627/ses-1/anat/sub-0025627_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025627/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025627/ses-1/label/catROI_sub-0025627_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x7/V9/MD5E-s57848--184a7344a0a37a9b207dd9b1da889742.mat/MD5E-s57848--184a7344a0a37a9b207dd9b1da889742.mat

JHNU/sub-0025627/ses-1/label/catROI_sub-0025627_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/fQ/MD5E-s188518--0fd5d91256af7c280538f1430ba38662.xml/MD5E-s188518--0fd5d91256af7c280538f1430ba38662.xml

JHNU/sub-0025627/ses-1/label/catROIs_sub-0025627_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/80/MD5E-s119939--4a8c4d96dcfb01fbe8efdead96ad807b.mat/MD5E-s119939--4a8c4d96dcfb01fbe8efdead96ad807b.mat

JHNU/sub-0025627/ses-1/label/catROIs_sub-0025627_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/pJ/MD5E-s332164--e6de3e8bffe73a26bcb05f262e29dce6.xml/MD5E-s332164--e6de3e8bffe73a26bcb05f262e29dce6.xml

JHNU/sub-0025627/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025627/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/wf/MD5E-s193323--dbb7a3bd9993c38d693528db85feaa32.nii.gz/MD5E-s193323--dbb7a3bd9993c38d693528db85feaa32.nii.gz

JHNU/sub-0025627/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025627/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/3V/MD5E-s216398--8bc19c8c4bc2863c5577aa0d1c60c603.nii.gz/MD5E-s216398--8bc19c8c4bc2863c5577aa0d1c60c603.nii.gz

JHNU/sub-0025627/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025627/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/qf/MD5E-s273391--dcdea08abe6c6ff5954498e04db88cf7.nii.gz/MD5E-s273391--dcdea08abe6c6ff5954498e04db88cf7.nii.gz

JHNU/sub-0025627/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025627/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025627_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/QJ/MD5E-s303666--5bdd9be7562db9454bde8a8c24cfb0de.nii.gz/MD5E-s303666--5bdd9be7562db9454bde8a8c24cfb0de.nii.gz

JHNU/sub-0025627/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025627_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/f5/MD5E-s26097--ab0bf6b2438f583e80e960899c78bda2.nii.gz/MD5E-s26097--ab0bf6b2438f583e80e960899c78bda2.nii.gz

JHNU/sub-0025627/ses-1/mri/aal3_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/aal3_sub-0025627_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025627/ses-1/mri/anatomy3_sub-0025627_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025627/ses-1/mri/anatomy3_sub-0025627_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/pj/MD5E-s152565--1248b5057984fb1bc76e2010f6bf9d32.nii.gz/MD5E-s152565--1248b5057984fb1bc76e2010f6bf9d32.nii.gz

JHNU/sub-0025627/ses-1/mri/anon_misub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/anon_msub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/cat_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/cobra_sub-0025627_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025627/ses-1/mri/cobra_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/hammers_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/hammers_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/ibsr_sub-0025627_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025627/ses-1/mri/ibsr_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/it_sub-0025627_ses-1_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/9k/p9/MD5E-s282--325e8f68bdf9e3f1bf8b0ff23e5a7a9f.mat/MD5E-s282--325e8f68bdf9e3f1bf8b0ff23e5a7a9f.mat

JHNU/sub-0025627/ses-1/mri/it_sub-0025627_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025627/ses-1/mri/iy_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/julichbrain_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/julichbrain_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/lpba40_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/lpba40_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/m0wp1sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/m0wp2sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/m0wp3sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/mori_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/mori_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/mwp1sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/mwp2sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/mwp3sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/neuromorphometrics_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/neuromorphometrics_sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/p0sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/p1sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/p2sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/p3sub-0025627_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025627/ses-1/mri/rp1sub-0025627_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025627/ses-1/mri/rp2sub-0025627_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025627/ses-1/mri/rp3sub-0025627_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025627/ses-1/mri/t_sub-0025627_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025627/ses-1/mri/t_sub-0025627_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025627/ses-1/mri/thalamus_sub-0025627_ses-1_run-1_T1w.csv

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JHNU/sub-0025627/ses-1/mri/thalamus_sub-0025627_ses-1_run-1_T1w.nii.gz

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