[DATALAD RUNCMD] Compute BNU_2/sub-0025981/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025981/ses-2/anat/sub-0025981_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025981/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025981/ses-2/label/catROI_sub-0025981_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/JW/MD5E-s57972--6760cd0b889184af585d1f84065877a8.mat/MD5E-s57972--6760cd0b889184af585d1f84065877a8.mat

BNU_2/sub-0025981/ses-2/label/catROI_sub-0025981_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/fx/MD5E-s188326--d8604dd12d25d163ebb1106aac20205e.xml/MD5E-s188326--d8604dd12d25d163ebb1106aac20205e.xml

BNU_2/sub-0025981/ses-2/label/catROIs_sub-0025981_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/FJ/MD5E-s120028--17f33b57ed9431eab74e429e9a48853f.mat/MD5E-s120028--17f33b57ed9431eab74e429e9a48853f.mat

BNU_2/sub-0025981/ses-2/label/catROIs_sub-0025981_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/5p/MD5E-s332096--240d0ce3f5dead39adbb289050c2e2a0.xml/MD5E-s332096--240d0ce3f5dead39adbb289050c2e2a0.xml

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/v7/MD5E-s181658--efdeeadaf8840f89a79f07f1ba0e9e5e.nii.gz/MD5E-s181658--efdeeadaf8840f89a79f07f1ba0e9e5e.nii.gz

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/z3/MD5E-s203586--e965f1d792d9edd223437b44560f7d5d.nii.gz/MD5E-s203586--e965f1d792d9edd223437b44560f7d5d.nii.gz

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/W3/MD5E-s273493--125b4809770efbf13a362ddc31062b26.nii.gz/MD5E-s273493--125b4809770efbf13a362ddc31062b26.nii.gz

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025981/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/z8/MD5E-s303999--18ca53a6085ea0c0879645423d95c4c6.nii.gz/MD5E-s303999--18ca53a6085ea0c0879645423d95c4c6.nii.gz

BNU_2/sub-0025981/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025981/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/Kw/MD5E-s25627--0ded31f770474961c028bc64b718e17b.nii.gz/MD5E-s25627--0ded31f770474961c028bc64b718e17b.nii.gz

BNU_2/sub-0025981/ses-2/mri/aal3_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025981/ses-2/mri/aal3_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/Fz/MD5E-s202066--83368f41f8b3a769ecc0db5b375517e4.nii.gz/MD5E-s202066--83368f41f8b3a769ecc0db5b375517e4.nii.gz

BNU_2/sub-0025981/ses-2/mri/anatomy3_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025981/ses-2/mri/anatomy3_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/2K/MD5E-s149494--afe589d6b62c967ae75b3362abd2d260.nii.gz/MD5E-s149494--afe589d6b62c967ae75b3362abd2d260.nii.gz

BNU_2/sub-0025981/ses-2/mri/anon_misub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Z/8m/MD5E-s5084304--212088c95b6ed1dfcfbb68e8f84c0e5b.nii.gz/MD5E-s5084304--212088c95b6ed1dfcfbb68e8f84c0e5b.nii.gz

BNU_2/sub-0025981/ses-2/mri/anon_msub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/1j/MD5E-s11490326--4cbadc03307cf479eea4fbc808bc3152.nii.gz/MD5E-s11490326--4cbadc03307cf479eea4fbc808bc3152.nii.gz

BNU_2/sub-0025981/ses-2/mri/cat_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/ZF/MD5E-s108056--27a27de3ba8bce135d3517569deda8de.nii.gz/MD5E-s108056--27a27de3ba8bce135d3517569deda8de.nii.gz

BNU_2/sub-0025981/ses-2/mri/cobra_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025981/ses-2/mri/cobra_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/6X/MD5E-s48841--fd3805dee0073091df56dea11a10c6ca.nii.gz/MD5E-s48841--fd3805dee0073091df56dea11a10c6ca.nii.gz

BNU_2/sub-0025981/ses-2/mri/hammers_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025981/ses-2/mri/hammers_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/wV/MD5E-s160768--4ab1602c04e10f0573441d17c4c4fe8f.nii.gz/MD5E-s160768--4ab1602c04e10f0573441d17c4c4fe8f.nii.gz

BNU_2/sub-0025981/ses-2/mri/ibsr_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025981/ses-2/mri/ibsr_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/9p/MD5E-s169405--688b76d73de0cda67690c853eb2be52c.nii.gz/MD5E-s169405--688b76d73de0cda67690c853eb2be52c.nii.gz

BNU_2/sub-0025981/ses-2/mri/it_sub-0025981_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/wg/MD5E-s283--18070f94e10cef7834cd010427e798d7.mat/MD5E-s283--18070f94e10cef7834cd010427e798d7.mat

BNU_2/sub-0025981/ses-2/mri/it_sub-0025981_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/F5/MD5E-s283--574864c662563f65ccc65168c8b6b240.mat/MD5E-s283--574864c662563f65ccc65168c8b6b240.mat

BNU_2/sub-0025981/ses-2/mri/iy_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/37/MD5E-s51554714--57bfaaa16023c8385c6b544f33ac9478.nii.gz/MD5E-s51554714--57bfaaa16023c8385c6b544f33ac9478.nii.gz

BNU_2/sub-0025981/ses-2/mri/julichbrain_sub-0025981_ses-2_run-1_T1w.csv

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BNU_2/sub-0025981/ses-2/mri/julichbrain_sub-0025981_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Mk/8V/MD5E-s220343--74cf2f9cbe3d46eded458144570f8d1a.nii.gz/MD5E-s220343--74cf2f9cbe3d46eded458144570f8d1a.nii.gz

BNU_2/sub-0025981/ses-2/mri/lpba40_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025981/ses-2/mri/lpba40_sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/m0wp1sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wz/pm/MD5E-s2572510--2122b9934fb4a247143f7ad8b8981406.nii.gz/MD5E-s2572510--2122b9934fb4a247143f7ad8b8981406.nii.gz

BNU_2/sub-0025981/ses-2/mri/m0wp2sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/V1/MD5E-s2300395--8e47c6bb1e255225aeeee417b4b82a26.nii.gz/MD5E-s2300395--8e47c6bb1e255225aeeee417b4b82a26.nii.gz

BNU_2/sub-0025981/ses-2/mri/m0wp3sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kz/0F/MD5E-s2477890--013172f5e02cc84ed3a23ada504375fd.nii.gz/MD5E-s2477890--013172f5e02cc84ed3a23ada504375fd.nii.gz

BNU_2/sub-0025981/ses-2/mri/mori_sub-0025981_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025981/ses-2/mri/mori_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/4M/MD5E-s187104--6cf9736c5071a732890270bb2ad35339.nii.gz/MD5E-s187104--6cf9736c5071a732890270bb2ad35339.nii.gz

BNU_2/sub-0025981/ses-2/mri/mwp1sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/mwp2sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/mwp3sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/neuromorphometrics_sub-0025981_ses-2_run-1_T1w.csv

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BNU_2/sub-0025981/ses-2/mri/neuromorphometrics_sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/p0sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/7w/MD5E-s701498--0298bc9540004719b1a1cf5614749c60.nii.gz/MD5E-s701498--0298bc9540004719b1a1cf5614749c60.nii.gz

BNU_2/sub-0025981/ses-2/mri/p1sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/p2sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/p3sub-0025981_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025981/ses-2/mri/rp1sub-0025981_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025981/ses-2/mri/rp2sub-0025981_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025981/ses-2/mri/rp3sub-0025981_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025981/ses-2/mri/t_sub-0025981_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025981/ses-2/mri/t_sub-0025981_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025981/ses-2/mri/thalamus_sub-0025981_ses-2_run-1_T1w.csv

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BNU_2/sub-0025981/ses-2/mri/thalamus_sub-0025981_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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