[DATALAD RUNCMD] Compute JHNU/sub-0025604/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025604/ses-1/anat/sub-0025604_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025604/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025604/ses-1/label/catROI_sub-0025604_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8M/8v/MD5E-s57688--b566c73b9aa0868b195b28a139223329.mat/MD5E-s57688--b566c73b9aa0868b195b28a139223329.mat

JHNU/sub-0025604/ses-1/label/catROI_sub-0025604_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9j/p2/MD5E-s188771--e66cea8d4810b0c1d661586220d806ca.xml/MD5E-s188771--e66cea8d4810b0c1d661586220d806ca.xml

JHNU/sub-0025604/ses-1/label/catROIs_sub-0025604_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/3f/MD5E-s120085--29615895efcb001fac99746034c325db.mat/MD5E-s120085--29615895efcb001fac99746034c325db.mat

JHNU/sub-0025604/ses-1/label/catROIs_sub-0025604_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/XK/MD5E-s332131--a7217f093cf11576814cb353da657293.xml/MD5E-s332131--a7217f093cf11576814cb353da657293.xml

JHNU/sub-0025604/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025604/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/2F/MD5E-s184920--ba7d516d69fd76197be6ab2b68c56eec.nii.gz/MD5E-s184920--ba7d516d69fd76197be6ab2b68c56eec.nii.gz

JHNU/sub-0025604/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025604/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/X2/MD5E-s206156--cce297797e9d7139914e960472978066.nii.gz/MD5E-s206156--cce297797e9d7139914e960472978066.nii.gz

JHNU/sub-0025604/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025604/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/mP/MD5E-s261745--79e328c2689eb8091c9c4cb0f254b6d2.nii.gz/MD5E-s261745--79e328c2689eb8091c9c4cb0f254b6d2.nii.gz

JHNU/sub-0025604/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025604/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/KK/MD5E-s291032--0bb7351f2d34a37d0171b09c39076e56.nii.gz/MD5E-s291032--0bb7351f2d34a37d0171b09c39076e56.nii.gz

JHNU/sub-0025604/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

JHNU/sub-0025604/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/Pz/MD5E-s25489--50ad2b86bbda191744b9971c21a43785.nii.gz/MD5E-s25489--50ad2b86bbda191744b9971c21a43785.nii.gz

JHNU/sub-0025604/ses-1/mri/aal3_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

JHNU/sub-0025604/ses-1/mri/aal3_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/PW/MD5E-s209387--187560bafc1be19b379e26f8bfe8f2e9.nii.gz/MD5E-s209387--187560bafc1be19b379e26f8bfe8f2e9.nii.gz

JHNU/sub-0025604/ses-1/mri/anatomy3_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

JHNU/sub-0025604/ses-1/mri/anatomy3_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k3/Qm/MD5E-s147939--6b0d76fd77fc1ae7917117c06fb42d67.nii.gz/MD5E-s147939--6b0d76fd77fc1ae7917117c06fb42d67.nii.gz

JHNU/sub-0025604/ses-1/mri/anon_misub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/8f/MD5E-s4607596--9c865f85fd5be9d0a7b7983a18d2f384.nii.gz/MD5E-s4607596--9c865f85fd5be9d0a7b7983a18d2f384.nii.gz

JHNU/sub-0025604/ses-1/mri/anon_msub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/9p/MD5E-s11330072--92612f6696d5d33a665a5a97b32fc3cb.nii.gz/MD5E-s11330072--92612f6696d5d33a665a5a97b32fc3cb.nii.gz

JHNU/sub-0025604/ses-1/mri/cat_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/qK/MD5E-s109460--64d0c9f5a53b2d97ce31b07ed5aa34d6.nii.gz/MD5E-s109460--64d0c9f5a53b2d97ce31b07ed5aa34d6.nii.gz

JHNU/sub-0025604/ses-1/mri/cobra_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025604/ses-1/mri/cobra_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/Kv/MD5E-s52234--7c0595aed18b411b79969177fcee7e7b.nii.gz/MD5E-s52234--7c0595aed18b411b79969177fcee7e7b.nii.gz

JHNU/sub-0025604/ses-1/mri/hammers_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

JHNU/sub-0025604/ses-1/mri/hammers_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/fZ/MD5E-s162183--6fa6821ef81ea05985b01015ec2e75d4.nii.gz/MD5E-s162183--6fa6821ef81ea05985b01015ec2e75d4.nii.gz

JHNU/sub-0025604/ses-1/mri/ibsr_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025604/ses-1/mri/ibsr_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X6/X7/MD5E-s168195--5d31f9427aacc8a70793e230292bafa3.nii.gz/MD5E-s168195--5d31f9427aacc8a70793e230292bafa3.nii.gz

JHNU/sub-0025604/ses-1/mri/it_sub-0025604_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/5q/MD5E-s282--4a7ee18106f85a29f30ca81fe36db3ad.mat/MD5E-s282--4a7ee18106f85a29f30ca81fe36db3ad.mat

JHNU/sub-0025604/ses-1/mri/it_sub-0025604_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jw/qZ/MD5E-s282--a2ec6b354fd2b87fc8caff2c9edff7d7.mat/MD5E-s282--a2ec6b354fd2b87fc8caff2c9edff7d7.mat

JHNU/sub-0025604/ses-1/mri/iy_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/5k/MD5E-s47681263--9bc3fee3cbb6bd47904aeb5cf72126a0.nii.gz/MD5E-s47681263--9bc3fee3cbb6bd47904aeb5cf72126a0.nii.gz

JHNU/sub-0025604/ses-1/mri/julichbrain_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

JHNU/sub-0025604/ses-1/mri/julichbrain_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/M1/MD5E-s220704--e0f20acaa6c871f56d531a685ae134e9.nii.gz/MD5E-s220704--e0f20acaa6c871f56d531a685ae134e9.nii.gz

JHNU/sub-0025604/ses-1/mri/lpba40_sub-0025604_ses-1_run-1_T1w.csv

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JHNU/sub-0025604/ses-1/mri/lpba40_sub-0025604_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/G1/m3/MD5E-s160777--db1f5e2b994db3238ce638858efdfc3e.nii.gz/MD5E-s160777--db1f5e2b994db3238ce638858efdfc3e.nii.gz

JHNU/sub-0025604/ses-1/mri/m0wp1sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/m0wp2sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/02/MD5E-s2277077--9069838ef32c11d392a28f478248c659.nii.gz/MD5E-s2277077--9069838ef32c11d392a28f478248c659.nii.gz

JHNU/sub-0025604/ses-1/mri/m0wp3sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025604/ses-1/mri/mori_sub-0025604_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

JHNU/sub-0025604/ses-1/mri/mori_sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/mwp1sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/mwp2sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/mwp3sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/neuromorphometrics_sub-0025604_ses-1_run-1_T1w.csv

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JHNU/sub-0025604/ses-1/mri/neuromorphometrics_sub-0025604_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025604/ses-1/mri/p0sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/p1sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/p2sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/p3sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/rp1sub-0025604_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025604/ses-1/mri/rp2sub-0025604_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025604/ses-1/mri/rp3sub-0025604_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025604/ses-1/mri/t_sub-0025604_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025604/ses-1/mri/t_sub-0025604_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025604/ses-1/mri/thalamus_sub-0025604_ses-1_run-1_T1w.csv

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JHNU/sub-0025604/ses-1/mri/thalamus_sub-0025604_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025604/ses-1/mri/wj_sub-0025604_ses-1_run-1_T1w.nii.gz

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