[DATALAD RUNCMD] Compute BNU_2/sub-0025979/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025979/ses-2/anat/sub-0025979_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025979/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025979/ses-2/label/catROI_sub-0025979_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q9/mQ/MD5E-s58252--780b219c1ad44e460714fab6bce0755f.mat/MD5E-s58252--780b219c1ad44e460714fab6bce0755f.mat

BNU_2/sub-0025979/ses-2/label/catROI_sub-0025979_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/pK/MD5E-s188407--65b3b04b68f47b4fabbc43362154f615.xml/MD5E-s188407--65b3b04b68f47b4fabbc43362154f615.xml

BNU_2/sub-0025979/ses-2/label/catROIs_sub-0025979_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/29/MD5E-s119950--106e6fe8d5f6780586cd341f2ac52c92.mat/MD5E-s119950--106e6fe8d5f6780586cd341f2ac52c92.mat

BNU_2/sub-0025979/ses-2/label/catROIs_sub-0025979_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/Wm/MD5E-s332074--0aeb1aaed53924482f1b04c3728fd29e.xml/MD5E-s332074--0aeb1aaed53924482f1b04c3728fd29e.xml

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/39/MD5E-s186667--7de1c1394bc7520d474ed553e6694ce2.nii.gz/MD5E-s186667--7de1c1394bc7520d474ed553e6694ce2.nii.gz

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/p4/MD5E-s210875--ea70789d4fee31b9c57891bd4f9afa9c.nii.gz/MD5E-s210875--ea70789d4fee31b9c57891bd4f9afa9c.nii.gz

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/M1/MD5E-s282163--db75adc9b1aa476bbe6c76e976583c03.nii.gz/MD5E-s282163--db75adc9b1aa476bbe6c76e976583c03.nii.gz

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025979/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/Wx/MD5E-s314773--16bf38db632b616ca82d4597d963bd5d.nii.gz/MD5E-s314773--16bf38db632b616ca82d4597d963bd5d.nii.gz

BNU_2/sub-0025979/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025979/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/3q/MD5E-s25855--6b6ace3cbb82d90ec5598b7f17f81954.nii.gz/MD5E-s25855--6b6ace3cbb82d90ec5598b7f17f81954.nii.gz

BNU_2/sub-0025979/ses-2/mri/aal3_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025979/ses-2/mri/aal3_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/8M/MD5E-s210361--f1256f1709727749d8252ee5a024194e.nii.gz/MD5E-s210361--f1256f1709727749d8252ee5a024194e.nii.gz

BNU_2/sub-0025979/ses-2/mri/anatomy3_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025979/ses-2/mri/anatomy3_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/F9/MD5E-s155069--4b110ad93d211e3faaa4e72a62f484c1.nii.gz/MD5E-s155069--4b110ad93d211e3faaa4e72a62f484c1.nii.gz

BNU_2/sub-0025979/ses-2/mri/anon_misub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/zX/MD5E-s5378794--af57062915a9e91d258feffb75d7bc4f.nii.gz/MD5E-s5378794--af57062915a9e91d258feffb75d7bc4f.nii.gz

BNU_2/sub-0025979/ses-2/mri/anon_msub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/P7/MD5E-s11321986--6ff8665d5705dfe41c2f14234912c958.nii.gz/MD5E-s11321986--6ff8665d5705dfe41c2f14234912c958.nii.gz

BNU_2/sub-0025979/ses-2/mri/cat_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/wP/MD5E-s110056--ec9f4112825ff751a48f800d7222f56c.nii.gz/MD5E-s110056--ec9f4112825ff751a48f800d7222f56c.nii.gz

BNU_2/sub-0025979/ses-2/mri/cobra_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025979/ses-2/mri/cobra_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/6x/MD5E-s53065--80cfad761f72e49ffaa50a0e7382f5de.nii.gz/MD5E-s53065--80cfad761f72e49ffaa50a0e7382f5de.nii.gz

BNU_2/sub-0025979/ses-2/mri/hammers_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025979/ses-2/mri/hammers_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/63/3F/MD5E-s165928--18bd40d776bf33e9db4c325507d366f0.nii.gz/MD5E-s165928--18bd40d776bf33e9db4c325507d366f0.nii.gz

BNU_2/sub-0025979/ses-2/mri/ibsr_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025979/ses-2/mri/ibsr_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z5/Pw/MD5E-s174993--52fc2d8e08b95038a347262264e88c98.nii.gz/MD5E-s174993--52fc2d8e08b95038a347262264e88c98.nii.gz

BNU_2/sub-0025979/ses-2/mri/it_sub-0025979_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/9m/MD5E-s283--2a1eecf3dda32c9011be66f5fc60db19.mat/MD5E-s283--2a1eecf3dda32c9011be66f5fc60db19.mat

BNU_2/sub-0025979/ses-2/mri/it_sub-0025979_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/fF/MD5E-s282--856031abfcc2fc55b8ddecffb4c74485.mat/MD5E-s282--856031abfcc2fc55b8ddecffb4c74485.mat

BNU_2/sub-0025979/ses-2/mri/iy_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/MZ/MD5E-s56222495--c382db1db5f0587c4cd5325d46d4c22e.nii.gz/MD5E-s56222495--c382db1db5f0587c4cd5325d46d4c22e.nii.gz

BNU_2/sub-0025979/ses-2/mri/julichbrain_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025979/ses-2/mri/julichbrain_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/08/MD5E-s226192--d88b8bce779148daecd8200bfb1ddc61.nii.gz/MD5E-s226192--d88b8bce779148daecd8200bfb1ddc61.nii.gz

BNU_2/sub-0025979/ses-2/mri/lpba40_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025979/ses-2/mri/lpba40_sub-0025979_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025979/ses-2/mri/m0wp1sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z1/x4/MD5E-s2561494--ac96df6e576df11c7c5a653f28cbf403.nii.gz/MD5E-s2561494--ac96df6e576df11c7c5a653f28cbf403.nii.gz

BNU_2/sub-0025979/ses-2/mri/m0wp2sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/Pj/MD5E-s2275215--5b1377eaf514bddc75ec26ba64f56ca5.nii.gz/MD5E-s2275215--5b1377eaf514bddc75ec26ba64f56ca5.nii.gz

BNU_2/sub-0025979/ses-2/mri/m0wp3sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/VJ/MD5E-s2420224--3bad19a4af8a9a90687b9c25a54e4e51.nii.gz/MD5E-s2420224--3bad19a4af8a9a90687b9c25a54e4e51.nii.gz

BNU_2/sub-0025979/ses-2/mri/mori_sub-0025979_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025979/ses-2/mri/mori_sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/4K/MD5E-s192095--0bb180651dec64b4f1e209970ec31e3c.nii.gz/MD5E-s192095--0bb180651dec64b4f1e209970ec31e3c.nii.gz

BNU_2/sub-0025979/ses-2/mri/mwp1sub-0025979_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025979/ses-2/mri/mwp2sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025979/ses-2/mri/mwp3sub-0025979_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025979/ses-2/mri/neuromorphometrics_sub-0025979_ses-2_run-1_T1w.csv

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BNU_2/sub-0025979/ses-2/mri/neuromorphometrics_sub-0025979_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025979/ses-2/mri/p0sub-0025979_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wj/gg/MD5E-s706056--844221621fcadb0a76bf4186f8c2d491.nii.gz/MD5E-s706056--844221621fcadb0a76bf4186f8c2d491.nii.gz

BNU_2/sub-0025979/ses-2/mri/p1sub-0025979_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025979/ses-2/mri/p2sub-0025979_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025979/ses-2/mri/p3sub-0025979_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025979/ses-2/mri/rp1sub-0025979_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025979/ses-2/mri/rp2sub-0025979_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025979/ses-2/mri/rp3sub-0025979_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025979/ses-2/mri/t_sub-0025979_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025979/ses-2/mri/t_sub-0025979_ses-2_run-1_T1w_rigid_reorient.mat

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BNU_2/sub-0025979/ses-2/mri/thalamus_sub-0025979_ses-2_run-1_T1w.csv

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BNU_2/sub-0025979/ses-2/mri/thalamus_sub-0025979_ses-2_run-1_T1w.nii.gz

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