[DATALAD RUNCMD] Compute IPCAS_3/sub-0025551/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_3/sub-0025551/ses-1/anat/sub-0025551_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_3/sub-0025551/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_3/sub-0025551/ses-1/label/catROI_sub-0025551_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/Pm/MD5E-s57690--43a7b0f180d4124a941f0d6d9ccc8ef3.mat/MD5E-s57690--43a7b0f180d4124a941f0d6d9ccc8ef3.mat

IPCAS_3/sub-0025551/ses-1/label/catROI_sub-0025551_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/QW/MD5E-s188673--1a89e6fdb0b21bb82e8a2c489a9595c2.xml/MD5E-s188673--1a89e6fdb0b21bb82e8a2c489a9595c2.xml

IPCAS_3/sub-0025551/ses-1/label/catROIs_sub-0025551_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/42/MD5E-s120071--99bbb1afe87db13f9e6754e29c0fab69.mat/MD5E-s120071--99bbb1afe87db13f9e6754e29c0fab69.mat

IPCAS_3/sub-0025551/ses-1/label/catROIs_sub-0025551_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/ZG/MD5E-s332102--1d5262d277a4572edb429def6168202b.xml/MD5E-s332102--1d5262d277a4572edb429def6168202b.xml

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/zJ/MD5E-s142866--6d4186d3b7ff1f7bd84366c37dfe73a9.nii.gz/MD5E-s142866--6d4186d3b7ff1f7bd84366c37dfe73a9.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/WW/MD5E-s157545--7c618b2fb82266127b7e7b8fd44bc1a6.nii.gz/MD5E-s157545--7c618b2fb82266127b7e7b8fd44bc1a6.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/PP/MD5E-s212421--df9399db29e2e627e2bd1f4ef00de0b9.nii.gz/MD5E-s212421--df9399db29e2e627e2bd1f4ef00de0b9.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_3/sub-0025551/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/81/MD5E-s234902--8009f805e8606ca3a54b497e74db897a.nii.gz/MD5E-s234902--8009f805e8606ca3a54b497e74db897a.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_3/sub-0025551/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/Jw/MD5E-s18349--04e8dd9690fd9c19cdb57b104f50244f.nii.gz/MD5E-s18349--04e8dd9690fd9c19cdb57b104f50244f.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/aal3_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_3/sub-0025551/ses-1/mri/aal3_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/PQ/MD5E-s159269--a9c15456c3ebf8e2d2fdcc107d41eef1.nii.gz/MD5E-s159269--a9c15456c3ebf8e2d2fdcc107d41eef1.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/anatomy3_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_3/sub-0025551/ses-1/mri/anatomy3_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/q5/MD5E-s113229--7011ebdcb0a7d4e96d84dfe3bbc4b20e.nii.gz/MD5E-s113229--7011ebdcb0a7d4e96d84dfe3bbc4b20e.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/anon_misub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/26/MD5E-s3878597--ecfaa54f34778cdff088d81cde1e9f21.nii.gz/MD5E-s3878597--ecfaa54f34778cdff088d81cde1e9f21.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/anon_msub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/Xk/MD5E-s9008769--ff09a4ef359a0ad000b36c59bb951c0b.nii.gz/MD5E-s9008769--ff09a4ef359a0ad000b36c59bb951c0b.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/cat_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/5p/MD5E-s84785--5c7310dca711ae92a50f4f2a6f5beff3.nii.gz/MD5E-s84785--5c7310dca711ae92a50f4f2a6f5beff3.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/cobra_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_3/sub-0025551/ses-1/mri/cobra_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/fw/MD5E-s39725--ff43f5b58dba595fc339f08e32fff66f.nii.gz/MD5E-s39725--ff43f5b58dba595fc339f08e32fff66f.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/hammers_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_3/sub-0025551/ses-1/mri/hammers_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/3z/MD5E-s125810--fa03103bea3b5dfa75667f65905271bf.nii.gz/MD5E-s125810--fa03103bea3b5dfa75667f65905271bf.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/ibsr_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_3/sub-0025551/ses-1/mri/ibsr_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/w4/MD5E-s132398--916e5b8483902ee7c7332411e6959131.nii.gz/MD5E-s132398--916e5b8483902ee7c7332411e6959131.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/it_sub-0025551_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/g8/MD5E-s282--a307aaf9c449d053845e4dcaedd7351d.mat/MD5E-s282--a307aaf9c449d053845e4dcaedd7351d.mat

IPCAS_3/sub-0025551/ses-1/mri/it_sub-0025551_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/Q8/MD5E-s283--3291e32ef972d3ebf9bd4042dc99a3b7.mat/MD5E-s283--3291e32ef972d3ebf9bd4042dc99a3b7.mat

IPCAS_3/sub-0025551/ses-1/mri/iy_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/k8/MD5E-s33456726--dd4076ea0c17c8c798de49c7fe248800.nii.gz/MD5E-s33456726--dd4076ea0c17c8c798de49c7fe248800.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/julichbrain_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/julichbrain_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/lpba40_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/lpba40_sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/m0wp1sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/m0wp2sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/gf/MD5E-s2283622--9fab80c18c501876865723aa19d627d2.nii.gz/MD5E-s2283622--9fab80c18c501876865723aa19d627d2.nii.gz

IPCAS_3/sub-0025551/ses-1/mri/m0wp3sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/mori_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IPCAS_3/sub-0025551/ses-1/mri/mori_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/mwp1sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/mwp2sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/mwp3sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/neuromorphometrics_sub-0025551_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/neuromorphometrics_sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/p0sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/p1sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/p2sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/p3sub-0025551_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/rp1sub-0025551_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/rp2sub-0025551_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/rp3sub-0025551_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025551/ses-1/mri/t_sub-0025551_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_3/sub-0025551/ses-1/mri/t_sub-0025551_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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IPCAS_3/sub-0025551/ses-1/mri/thalamus_sub-0025551_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025551/ses-1/mri/thalamus_sub-0025551_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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