[DATALAD RUNCMD] Compute IACAS/sub-0025483/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025483/ses-2/anat/sub-0025483_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025483/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025483/ses-2/label/catROI_sub-0025483_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/MV/MD5E-s58077--191c15be4ec543fdaa9e33d6d65ea901.mat/MD5E-s58077--191c15be4ec543fdaa9e33d6d65ea901.mat

IACAS/sub-0025483/ses-2/label/catROI_sub-0025483_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/xW/MD5E-s188777--ef868730e7d16dbbba6eb53fc4191ddb.xml/MD5E-s188777--ef868730e7d16dbbba6eb53fc4191ddb.xml

IACAS/sub-0025483/ses-2/label/catROIs_sub-0025483_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P6/jq/MD5E-s120168--5d95142fdd0a2c5c01d0a33129215d01.mat/MD5E-s120168--5d95142fdd0a2c5c01d0a33129215d01.mat

IACAS/sub-0025483/ses-2/label/catROIs_sub-0025483_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/j1/MD5E-s332122--3f63bfff977166e182e6bfacd3b9add6.xml/MD5E-s332122--3f63bfff977166e182e6bfacd3b9add6.xml

IACAS/sub-0025483/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025483/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/0x/MD5E-s171099--d03b305b38b2c87ad0d3ff692893d793.nii.gz/MD5E-s171099--d03b305b38b2c87ad0d3ff692893d793.nii.gz

IACAS/sub-0025483/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025483/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/9z/MD5E-s192113--9068b8ca65475ee0a7bf957db182f552.nii.gz/MD5E-s192113--9068b8ca65475ee0a7bf957db182f552.nii.gz

IACAS/sub-0025483/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025483/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/0P/MD5E-s258973--c8276938c06b88c1bb6bed1cd4d5caf8.nii.gz/MD5E-s258973--c8276938c06b88c1bb6bed1cd4d5caf8.nii.gz

IACAS/sub-0025483/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025483/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/7g/MD5E-s288082--e8e1e3fd17fce82e497ffb5ecf836fec.nii.gz/MD5E-s288082--e8e1e3fd17fce82e497ffb5ecf836fec.nii.gz

IACAS/sub-0025483/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025483/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qj/KF/MD5E-s26114--9fc5c32c007ebb30e38a44fcac320f64.nii.gz/MD5E-s26114--9fc5c32c007ebb30e38a44fcac320f64.nii.gz

IACAS/sub-0025483/ses-2/mri/aal3_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025483/ses-2/mri/aal3_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/gP/MD5E-s191860--d41e98a4964d6a4d4ed10bbfc7405473.nii.gz/MD5E-s191860--d41e98a4964d6a4d4ed10bbfc7405473.nii.gz

IACAS/sub-0025483/ses-2/mri/anatomy3_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025483/ses-2/mri/anatomy3_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fX/K4/MD5E-s140282--9cd56562d5d6673f03529b4ed5cd3571.nii.gz/MD5E-s140282--9cd56562d5d6673f03529b4ed5cd3571.nii.gz

IACAS/sub-0025483/ses-2/mri/anon_misub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/6p/MD5E-s9624187--e7deef40e43164ca8ebe5aa862eefb77.nii.gz/MD5E-s9624187--e7deef40e43164ca8ebe5aa862eefb77.nii.gz

IACAS/sub-0025483/ses-2/mri/anon_msub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/5x/MD5E-s10906480--85776069f3ebf16c55e1fd35c8f87cc2.nii.gz/MD5E-s10906480--85776069f3ebf16c55e1fd35c8f87cc2.nii.gz

IACAS/sub-0025483/ses-2/mri/cat_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/Q2/MD5E-s107948--a41089ae0a9c42081f078a1acff2e5a3.nii.gz/MD5E-s107948--a41089ae0a9c42081f078a1acff2e5a3.nii.gz

IACAS/sub-0025483/ses-2/mri/cobra_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025483/ses-2/mri/cobra_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025483/ses-2/mri/hammers_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025483/ses-2/mri/hammers_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/V1/MD5E-s152629--f878c8ae2eb352d56b7b010bb834b0dc.nii.gz/MD5E-s152629--f878c8ae2eb352d56b7b010bb834b0dc.nii.gz

IACAS/sub-0025483/ses-2/mri/ibsr_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025483/ses-2/mri/ibsr_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/3j/MD5E-s160710--2998a2e5e1c5c6651880a1ffee0ac408.nii.gz/MD5E-s160710--2998a2e5e1c5c6651880a1ffee0ac408.nii.gz

IACAS/sub-0025483/ses-2/mri/it_sub-0025483_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/jx/MD5E-s282--37a2c60256c3ba5175cdcc772ba37c8a.mat/MD5E-s282--37a2c60256c3ba5175cdcc772ba37c8a.mat

IACAS/sub-0025483/ses-2/mri/it_sub-0025483_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PM/jw/MD5E-s282--49d27685d349f182e595c68cd6371842.mat/MD5E-s282--49d27685d349f182e595c68cd6371842.mat

IACAS/sub-0025483/ses-2/mri/iy_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/Q9/MD5E-s49430745--cb3cda1586380167534f19ce554d7c4f.nii.gz/MD5E-s49430745--cb3cda1586380167534f19ce554d7c4f.nii.gz

IACAS/sub-0025483/ses-2/mri/julichbrain_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025483/ses-2/mri/julichbrain_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/8P/MD5E-s204980--d817b3643acf647e50af0ca163b93a3b.nii.gz/MD5E-s204980--d817b3643acf647e50af0ca163b93a3b.nii.gz

IACAS/sub-0025483/ses-2/mri/lpba40_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

IACAS/sub-0025483/ses-2/mri/lpba40_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/v0/MD5E-s149981--40c4e68eb990173d32f98dca05e3cf76.nii.gz/MD5E-s149981--40c4e68eb990173d32f98dca05e3cf76.nii.gz

IACAS/sub-0025483/ses-2/mri/m0wp1sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/v7/MD5E-s2578683--424661ff7cf4857014f38164380f7358.nii.gz/MD5E-s2578683--424661ff7cf4857014f38164380f7358.nii.gz

IACAS/sub-0025483/ses-2/mri/m0wp2sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/PJ/MD5E-s2356109--e8e2a334160dce94fe9f83bc0248a35e.nii.gz/MD5E-s2356109--e8e2a334160dce94fe9f83bc0248a35e.nii.gz

IACAS/sub-0025483/ses-2/mri/m0wp3sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/0v/MD5E-s2560359--815ea458fb9b1e4cffdf0d1202497b8b.nii.gz/MD5E-s2560359--815ea458fb9b1e4cffdf0d1202497b8b.nii.gz

IACAS/sub-0025483/ses-2/mri/mori_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IACAS/sub-0025483/ses-2/mri/mori_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025483/ses-2/mri/mwp1sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/4m/MD5E-s2579104--4d5b0fa5b3b01df32e687eb93e84766c.nii.gz/MD5E-s2579104--4d5b0fa5b3b01df32e687eb93e84766c.nii.gz

IACAS/sub-0025483/ses-2/mri/mwp2sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025483/ses-2/mri/mwp3sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/QK/MD5E-s2556671--f068ec4103b9c71759232c86cc8cbe36.nii.gz/MD5E-s2556671--f068ec4103b9c71759232c86cc8cbe36.nii.gz

IACAS/sub-0025483/ses-2/mri/neuromorphometrics_sub-0025483_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

IACAS/sub-0025483/ses-2/mri/neuromorphometrics_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025483/ses-2/mri/p0sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025483/ses-2/mri/p1sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025483/ses-2/mri/p2sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025483/ses-2/mri/p3sub-0025483_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025483/ses-2/mri/rp1sub-0025483_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025483/ses-2/mri/rp2sub-0025483_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025483/ses-2/mri/rp3sub-0025483_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025483/ses-2/mri/t_sub-0025483_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025483/ses-2/mri/t_sub-0025483_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025483/ses-2/mri/thalamus_sub-0025483_ses-2_run-1_T1w.csv

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IACAS/sub-0025483/ses-2/mri/thalamus_sub-0025483_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025483/ses-2/mri/wj_sub-0025483_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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