[DATALAD RUNCMD] Compute LMU_3/sub-0025416/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025416/ses-2/anat/sub-0025416_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025416/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025416/ses-2/label/catROI_sub-0025416_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/G0/MD5E-s58052--8f01f9d797e7b85c9aa9cc1c3dd189c1.mat/MD5E-s58052--8f01f9d797e7b85c9aa9cc1c3dd189c1.mat

LMU_3/sub-0025416/ses-2/label/catROI_sub-0025416_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/Gm/MD5E-s189276--55f04e1a32c9413f1864a7c380d7facd.xml/MD5E-s189276--55f04e1a32c9413f1864a7c380d7facd.xml

LMU_3/sub-0025416/ses-2/label/catROIs_sub-0025416_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/KZ/MD5E-s120127--2b11d1415e98ac8369fdbae335fedd91.mat/MD5E-s120127--2b11d1415e98ac8369fdbae335fedd91.mat

LMU_3/sub-0025416/ses-2/label/catROIs_sub-0025416_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/px/MD5E-s332142--46e1a83d3ba908bd365ac1d79bdc3477.xml/MD5E-s332142--46e1a83d3ba908bd365ac1d79bdc3477.xml

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/8j/MD5E-s154582--c6f4fdf0f30d3c36565dd42205649fdf.nii.gz/MD5E-s154582--c6f4fdf0f30d3c36565dd42205649fdf.nii.gz

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jf/jF/MD5E-s174213--1b4ff35ba0490d308691c6ea9cccd0e2.nii.gz/MD5E-s174213--1b4ff35ba0490d308691c6ea9cccd0e2.nii.gz

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Q/Wz/MD5E-s234105--5305104d6eebe56729de3a1b985f023b.nii.gz/MD5E-s234105--5305104d6eebe56729de3a1b985f023b.nii.gz

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025416/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/zz/MD5E-s260915--c0092012bbd94cf83d90780d3bf5ed37.nii.gz/MD5E-s260915--c0092012bbd94cf83d90780d3bf5ed37.nii.gz

LMU_3/sub-0025416/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025416/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/84/MD5E-s22967--e919dec6666c2f3e00efefdb5b975bb5.nii.gz/MD5E-s22967--e919dec6666c2f3e00efefdb5b975bb5.nii.gz

LMU_3/sub-0025416/ses-2/mri/aal3_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025416/ses-2/mri/aal3_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/Z2/MD5E-s180846--534c33755ec59cae1b6da389a8b6d3e3.nii.gz/MD5E-s180846--534c33755ec59cae1b6da389a8b6d3e3.nii.gz

LMU_3/sub-0025416/ses-2/mri/anatomy3_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025416/ses-2/mri/anatomy3_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/Xv/MD5E-s126300--2aad0cd4dd67ab4e481557b7aa0a47d3.nii.gz/MD5E-s126300--2aad0cd4dd67ab4e481557b7aa0a47d3.nii.gz

LMU_3/sub-0025416/ses-2/mri/anon_misub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/Fv/MD5E-s10088986--51c323721204ab3ce21ed7eb94247181.nii.gz/MD5E-s10088986--51c323721204ab3ce21ed7eb94247181.nii.gz

LMU_3/sub-0025416/ses-2/mri/anon_msub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/JK/MD5E-s10451724--4ce24b6fd19f4031f56697f420661606.nii.gz/MD5E-s10451724--4ce24b6fd19f4031f56697f420661606.nii.gz

LMU_3/sub-0025416/ses-2/mri/cat_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/f9/MD5E-s107419--20bc8e43975852172bc06e4a8c59687c.nii.gz/MD5E-s107419--20bc8e43975852172bc06e4a8c59687c.nii.gz

LMU_3/sub-0025416/ses-2/mri/cobra_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025416/ses-2/mri/cobra_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/kG/MD5E-s46127--e60067f1d29fde14444ceabd133984bb.nii.gz/MD5E-s46127--e60067f1d29fde14444ceabd133984bb.nii.gz

LMU_3/sub-0025416/ses-2/mri/hammers_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025416/ses-2/mri/hammers_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/4Z/MD5E-s140540--379ab9e5faa3230971f695b7db354bcc.nii.gz/MD5E-s140540--379ab9e5faa3230971f695b7db354bcc.nii.gz

LMU_3/sub-0025416/ses-2/mri/ibsr_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025416/ses-2/mri/ibsr_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q9/8K/MD5E-s148812--b0f1c6abb0e8e51b77a797fb8885a47f.nii.gz/MD5E-s148812--b0f1c6abb0e8e51b77a797fb8885a47f.nii.gz

LMU_3/sub-0025416/ses-2/mri/it_sub-0025416_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/2j/MD5E-s282--1873c97968a0cc2131eb7e757d7762a2.mat/MD5E-s282--1873c97968a0cc2131eb7e757d7762a2.mat

LMU_3/sub-0025416/ses-2/mri/it_sub-0025416_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/JQ/MD5E-s282--e50c33237aebdb7c8794818a56a87afd.mat/MD5E-s282--e50c33237aebdb7c8794818a56a87afd.mat

LMU_3/sub-0025416/ses-2/mri/iy_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gv/3j/MD5E-s43312643--44b686773e7ae094bc0ce03029055c47.nii.gz/MD5E-s43312643--44b686773e7ae094bc0ce03029055c47.nii.gz

LMU_3/sub-0025416/ses-2/mri/julichbrain_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025416/ses-2/mri/julichbrain_sub-0025416_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/G5/f5/MD5E-s187054--0e40cc937a7b425cb3f7e969fd7bf2fb.nii.gz/MD5E-s187054--0e40cc937a7b425cb3f7e969fd7bf2fb.nii.gz

LMU_3/sub-0025416/ses-2/mri/lpba40_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025416/ses-2/mri/lpba40_sub-0025416_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025416/ses-2/mri/m0wp1sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/QF/MD5E-s2609991--1e3560df7d4e4c6ec53f07f7eee9ff45.nii.gz/MD5E-s2609991--1e3560df7d4e4c6ec53f07f7eee9ff45.nii.gz

LMU_3/sub-0025416/ses-2/mri/m0wp2sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/9V/MD5E-s2324592--4fd5068a67b4a789d5140e4344f4caed.nii.gz/MD5E-s2324592--4fd5068a67b4a789d5140e4344f4caed.nii.gz

LMU_3/sub-0025416/ses-2/mri/m0wp3sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/m8/MD5E-s2707944--0ec214fdee8f6918f78fcbca4b166b28.nii.gz/MD5E-s2707944--0ec214fdee8f6918f78fcbca4b166b28.nii.gz

LMU_3/sub-0025416/ses-2/mri/mori_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025416/ses-2/mri/mori_sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/Mp/MD5E-s166295--53a414c54319c42933e051fd11bd475c.nii.gz/MD5E-s166295--53a414c54319c42933e051fd11bd475c.nii.gz

LMU_3/sub-0025416/ses-2/mri/mwp1sub-0025416_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025416/ses-2/mri/mwp2sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/6V/MD5E-s2328163--567510ad64a5ccfb7aea7578e7b31d13.nii.gz/MD5E-s2328163--567510ad64a5ccfb7aea7578e7b31d13.nii.gz

LMU_3/sub-0025416/ses-2/mri/mwp3sub-0025416_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025416/ses-2/mri/neuromorphometrics_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025416/ses-2/mri/neuromorphometrics_sub-0025416_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025416/ses-2/mri/p0sub-0025416_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qg/54/MD5E-s655051--da5f5de03e0880da24979a3f62d61142.nii.gz/MD5E-s655051--da5f5de03e0880da24979a3f62d61142.nii.gz

LMU_3/sub-0025416/ses-2/mri/p1sub-0025416_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025416/ses-2/mri/p2sub-0025416_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025416/ses-2/mri/p3sub-0025416_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025416/ses-2/mri/rp1sub-0025416_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025416/ses-2/mri/rp2sub-0025416_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025416/ses-2/mri/rp3sub-0025416_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025416/ses-2/mri/t_sub-0025416_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1P/Gp/MD5E-s282--6eef770612321a4e7957b6ffffc46f38.mat/MD5E-s282--6eef770612321a4e7957b6ffffc46f38.mat

LMU_3/sub-0025416/ses-2/mri/t_sub-0025416_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025416/ses-2/mri/thalamus_sub-0025416_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

LMU_3/sub-0025416/ses-2/mri/thalamus_sub-0025416_ses-2_run-1_T1w.nii.gz

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