[DATALAD RUNCMD] Compute SWU_1/sub-0027204/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027204/ses-3/anat/sub-0027204_ses-3_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027204/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027204/ses-3/label/catROI_sub-0027204_ses-3_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xp/fm/MD5E-s61205--a24928869fa6aab5ad5f2ef45dee2096.mat/MD5E-s61205--a24928869fa6aab5ad5f2ef45dee2096.mat

SWU_1/sub-0027204/ses-3/label/catROI_sub-0027204_ses-3_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/MF/v0/MD5E-s188882--982181dad2d191ddf003d179c4cd7541.xml/MD5E-s188882--982181dad2d191ddf003d179c4cd7541.xml

SWU_1/sub-0027204/ses-3/label/catROI_sub-0027204_ses-3_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Z/34/MD5E-s61252--d26d715fee307ff70455fd24f89263ee.mat/MD5E-s61252--d26d715fee307ff70455fd24f89263ee.mat

SWU_1/sub-0027204/ses-3/label/catROI_sub-0027204_ses-3_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/07/MD5E-s188976--02abeeed795212623cc657f0820c0c66.xml/MD5E-s188976--02abeeed795212623cc657f0820c0c66.xml

SWU_1/sub-0027204/ses-3/label/catROIs_sub-0027204_ses-3_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/00/m1/MD5E-s120099--f370282ed1733b86aaada594861d2c05.mat/MD5E-s120099--f370282ed1733b86aaada594861d2c05.mat

SWU_1/sub-0027204/ses-3/label/catROIs_sub-0027204_ses-3_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g1/60/MD5E-s332153--f18725b7cd39ce56fec10e595324bd48.xml/MD5E-s332153--f18725b7cd39ce56fec10e595324bd48.xml

SWU_1/sub-0027204/ses-3/label/catROIs_sub-0027204_ses-3_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/ff/MD5E-s120023--8514df4162b3bc4d84d7e5abb30b813f.mat/MD5E-s120023--8514df4162b3bc4d84d7e5abb30b813f.mat

SWU_1/sub-0027204/ses-3/label/catROIs_sub-0027204_ses-3_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/QF/MD5E-s332154--48c7e56ec0996d7d3942f7a82f5a3043.xml/MD5E-s332154--48c7e56ec0996d7d3942f7a82f5a3043.xml

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P1/50/MD5E-s165423--b8c9a7da800998cc558956ca05df4cef.nii.gz/MD5E-s165423--b8c9a7da800998cc558956ca05df4cef.nii.gz

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/5p/MD5E-s166126--8415025f69645860f0402877f6f6ce83.nii.gz/MD5E-s166126--8415025f69645860f0402877f6f6ce83.nii.gz

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9P/P8/MD5E-s183615--09779ad95de7dfb4f43ae0a1d328c990.nii.gz/MD5E-s183615--09779ad95de7dfb4f43ae0a1d328c990.nii.gz

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/76/MD5E-s184848--138d78019c44d0dac194d2d620da0f0b.nii.gz/MD5E-s184848--138d78019c44d0dac194d2d620da0f0b.nii.gz

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7m/Mq/MD5E-s248988--9bd28fb87daf6c004127ddf2f4205d2c.nii.gz/MD5E-s248988--9bd28fb87daf6c004127ddf2f4205d2c.nii.gz

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/6M/MD5E-s248802--95b351d506edba49c27601f515e5dd6f.nii.gz/MD5E-s248802--95b351d506edba49c27601f515e5dd6f.nii.gz

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/55/gV/MD5E-s276108--dbda8f1c238f552ecdda546b3fc80dd8.nii.gz/MD5E-s276108--dbda8f1c238f552ecdda546b3fc80dd8.nii.gz

SWU_1/sub-0027204/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/mz/MD5E-s276351--0371b062fea0da25f2a5a6c621a6835f.nii.gz/MD5E-s276351--0371b062fea0da25f2a5a6c621a6835f.nii.gz

SWU_1/sub-0027204/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W2/7W/MD5E-s24919--0cd53d059a4ac758ef1be44302211a1a.nii.gz/MD5E-s24919--0cd53d059a4ac758ef1be44302211a1a.nii.gz

SWU_1/sub-0027204/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g3/kp/MD5E-s24548--fe70e8e06a78ea8dca84ff274cb45d18.nii.gz/MD5E-s24548--fe70e8e06a78ea8dca84ff274cb45d18.nii.gz

SWU_1/sub-0027204/ses-3/mri/aal3_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KW/2Q/MD5E-s186186--f9932600cf03a71ce926fd2a64e96670.nii.gz/MD5E-s186186--f9932600cf03a71ce926fd2a64e96670.nii.gz

SWU_1/sub-0027204/ses-3/mri/aal3_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/07/MD5E-s186961--9f8a4797ba42452043540f6a35fa17b2.nii.gz/MD5E-s186961--9f8a4797ba42452043540f6a35fa17b2.nii.gz

SWU_1/sub-0027204/ses-3/mri/anatomy3_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J6/78/MD5E-s136180--e3f8d25ba9203cf58fce5ba58369cc20.nii.gz/MD5E-s136180--e3f8d25ba9203cf58fce5ba58369cc20.nii.gz

SWU_1/sub-0027204/ses-3/mri/anatomy3_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/Vp/MD5E-s136299--442b40e8fbffa5e5948e4625b98de4ef.nii.gz/MD5E-s136299--442b40e8fbffa5e5948e4625b98de4ef.nii.gz

SWU_1/sub-0027204/ses-3/mri/anon_misub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/anon_misub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/8G/MD5E-s8954079--79a93129cec55b83fcf6439d9958451f.nii.gz/MD5E-s8954079--79a93129cec55b83fcf6439d9958451f.nii.gz

SWU_1/sub-0027204/ses-3/mri/anon_msub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/anon_msub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9f/q2/MD5E-s8691674--3d0fd310b60117f06ccbb7f642b6d7ee.nii.gz/MD5E-s8691674--3d0fd310b60117f06ccbb7f642b6d7ee.nii.gz

SWU_1/sub-0027204/ses-3/mri/cat_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1v/F0/MD5E-s99384--a4a5e861278ac9323be99a7ca27eef54.nii.gz/MD5E-s99384--a4a5e861278ac9323be99a7ca27eef54.nii.gz

SWU_1/sub-0027204/ses-3/mri/cat_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/JZ/MD5E-s99250--c44c5e78fa7962b921cddf04925b8820.nii.gz/MD5E-s99250--c44c5e78fa7962b921cddf04925b8820.nii.gz

SWU_1/sub-0027204/ses-3/mri/cobra_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/cobra_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027204/ses-3/mri/hammers_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/hammers_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027204/ses-3/mri/ibsr_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/ibsr_sub-0027204_ses-3_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027204/ses-3/mri/it_sub-0027204_ses-3_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9k/mv/MD5E-s282--ea31415d1c51f7f56263a14f90c3b3b9.mat/MD5E-s282--ea31415d1c51f7f56263a14f90c3b3b9.mat

SWU_1/sub-0027204/ses-3/mri/it_sub-0027204_ses-3_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/it_sub-0027204_ses-3_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/02/MD5E-s284--f3e80a3f38def624925efa41decd209e.mat/MD5E-s284--f3e80a3f38def624925efa41decd209e.mat

SWU_1/sub-0027204/ses-3/mri/it_sub-0027204_ses-3_run-2_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027204/ses-3/mri/iy_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/iy_sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/julichbrain_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/julichbrain_sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/lpba40_sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/lpba40_sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/m0wp1sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/m0wp1sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/m0wp2sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027204/ses-3/mri/m0wp2sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/m0wp3sub-0027204_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/m0wp3sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/mori_sub-0027204_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/mori_sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/mwp1sub-0027204_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/mwp1sub-0027204_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027204/ses-3/mri/mwp2sub-0027204_ses-3_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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