[DATALAD RUNCMD] Compute LMU_3/sub-0025415/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025415/ses-2/anat/sub-0025415_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025415/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025415/ses-2/label/catROI_sub-0025415_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/2f/MD5E-s57811--f641f0ef68e1d4ae8ae099fe41f2b150.mat/MD5E-s57811--f641f0ef68e1d4ae8ae099fe41f2b150.mat

LMU_3/sub-0025415/ses-2/label/catROI_sub-0025415_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/x8/MD5E-s189491--d09c8ae9bb7b44a349be196067456143.xml/MD5E-s189491--d09c8ae9bb7b44a349be196067456143.xml

LMU_3/sub-0025415/ses-2/label/catROIs_sub-0025415_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/23/MD5E-s120218--5d3f4e889b3446b073dc8cd47aabc7b0.mat/MD5E-s120218--5d3f4e889b3446b073dc8cd47aabc7b0.mat

LMU_3/sub-0025415/ses-2/label/catROIs_sub-0025415_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/1M/MD5E-s332110--3d7a992b3c403bdc9642dbec58b73232.xml/MD5E-s332110--3d7a992b3c403bdc9642dbec58b73232.xml

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/MX/MD5E-s147617--ce756b4b4ab6efe0c4dfdce7a14b6738.nii.gz/MD5E-s147617--ce756b4b4ab6efe0c4dfdce7a14b6738.nii.gz

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J0/66/MD5E-s166735--613e69d888f173dcd41ad7c0405c65d2.nii.gz/MD5E-s166735--613e69d888f173dcd41ad7c0405c65d2.nii.gz

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/G9/MD5E-s225742--581c307932794f3ef284a7101eff9030.nii.gz/MD5E-s225742--581c307932794f3ef284a7101eff9030.nii.gz

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025415/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mg/kK/MD5E-s252009--ad5ea22c3202d0f9752921ceb7ac40f5.nii.gz/MD5E-s252009--ad5ea22c3202d0f9752921ceb7ac40f5.nii.gz

LMU_3/sub-0025415/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025415/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/6v/MD5E-s22902--b38633eedd9fcd4be924089b9431a0b8.nii.gz/MD5E-s22902--b38633eedd9fcd4be924089b9431a0b8.nii.gz

LMU_3/sub-0025415/ses-2/mri/aal3_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025415/ses-2/mri/aal3_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/8p/MD5E-s173557--668fafca8a2db8ce6527f791481a1bef.nii.gz/MD5E-s173557--668fafca8a2db8ce6527f791481a1bef.nii.gz

LMU_3/sub-0025415/ses-2/mri/anatomy3_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025415/ses-2/mri/anatomy3_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7K/w3/MD5E-s122473--004d5887bbcd4074eb3da029acd7ede6.nii.gz/MD5E-s122473--004d5887bbcd4074eb3da029acd7ede6.nii.gz

LMU_3/sub-0025415/ses-2/mri/anon_misub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/9k/MD5E-s10291670--ac8a2e0dbc50190cc0e0673fb0cf1fbd.nii.gz/MD5E-s10291670--ac8a2e0dbc50190cc0e0673fb0cf1fbd.nii.gz

LMU_3/sub-0025415/ses-2/mri/anon_msub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/jx/MD5E-s10861292--69c6daa76a09aa9b8ea63408887ab8e1.nii.gz/MD5E-s10861292--69c6daa76a09aa9b8ea63408887ab8e1.nii.gz

LMU_3/sub-0025415/ses-2/mri/cat_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/K6/MD5E-s105460--002a80ca91bea0a52f1646493bdc8945.nii.gz/MD5E-s105460--002a80ca91bea0a52f1646493bdc8945.nii.gz

LMU_3/sub-0025415/ses-2/mri/cobra_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025415/ses-2/mri/cobra_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KZ/Pp/MD5E-s46211--359b4915f9f414a6ada40028526a27ad.nii.gz/MD5E-s46211--359b4915f9f414a6ada40028526a27ad.nii.gz

LMU_3/sub-0025415/ses-2/mri/hammers_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025415/ses-2/mri/hammers_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/Pg/MD5E-s138432--b6bd283df948589fd54bfab1f3639312.nii.gz/MD5E-s138432--b6bd283df948589fd54bfab1f3639312.nii.gz

LMU_3/sub-0025415/ses-2/mri/ibsr_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025415/ses-2/mri/ibsr_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/wX/MD5E-s144310--5fd4a24670d8342cbeafa8d5e6d868fe.nii.gz/MD5E-s144310--5fd4a24670d8342cbeafa8d5e6d868fe.nii.gz

LMU_3/sub-0025415/ses-2/mri/it_sub-0025415_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/P0/MD5E-s283--8a61134bef19cfde2b808ced09bc180a.mat/MD5E-s283--8a61134bef19cfde2b808ced09bc180a.mat

LMU_3/sub-0025415/ses-2/mri/it_sub-0025415_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/89/MD5E-s282--78f69e29ee70477fe275667a9ec8347a.mat/MD5E-s282--78f69e29ee70477fe275667a9ec8347a.mat

LMU_3/sub-0025415/ses-2/mri/iy_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/q3/MD5E-s43253690--6fccf8b8ef164b0407e3b902c73bd1c4.nii.gz/MD5E-s43253690--6fccf8b8ef164b0407e3b902c73bd1c4.nii.gz

LMU_3/sub-0025415/ses-2/mri/julichbrain_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025415/ses-2/mri/julichbrain_sub-0025415_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/vK/Gg/MD5E-s180811--f2d961c45602d4ceb0d3edf7bad74970.nii.gz/MD5E-s180811--f2d961c45602d4ceb0d3edf7bad74970.nii.gz

LMU_3/sub-0025415/ses-2/mri/lpba40_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025415/ses-2/mri/lpba40_sub-0025415_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025415/ses-2/mri/m0wp1sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f2/vG/MD5E-s2616073--a1aff79d4f5b1a96271173fa71c562fc.nii.gz/MD5E-s2616073--a1aff79d4f5b1a96271173fa71c562fc.nii.gz

LMU_3/sub-0025415/ses-2/mri/m0wp2sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/Jf/MD5E-s2302876--348e23897838cd99c2c48ebcd6c4b8e8.nii.gz/MD5E-s2302876--348e23897838cd99c2c48ebcd6c4b8e8.nii.gz

LMU_3/sub-0025415/ses-2/mri/m0wp3sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/m8/MD5E-s2794532--c4af818890c6f4d933e941fafb47c23f.nii.gz/MD5E-s2794532--c4af818890c6f4d933e941fafb47c23f.nii.gz

LMU_3/sub-0025415/ses-2/mri/mori_sub-0025415_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025415/ses-2/mri/mori_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/1f/MD5E-s161951--ec330f653e04d66b6d493b7825f411b3.nii.gz/MD5E-s161951--ec330f653e04d66b6d493b7825f411b3.nii.gz

LMU_3/sub-0025415/ses-2/mri/mwp1sub-0025415_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025415/ses-2/mri/mwp2sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025415/ses-2/mri/mwp3sub-0025415_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025415/ses-2/mri/neuromorphometrics_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025415/ses-2/mri/neuromorphometrics_sub-0025415_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025415/ses-2/mri/p0sub-0025415_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/zv/xj/MD5E-s607846--05113bd2ccca082e5ebbbe780387e405.nii.gz/MD5E-s607846--05113bd2ccca082e5ebbbe780387e405.nii.gz

LMU_3/sub-0025415/ses-2/mri/p1sub-0025415_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025415/ses-2/mri/p2sub-0025415_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025415/ses-2/mri/p3sub-0025415_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025415/ses-2/mri/rp1sub-0025415_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025415/ses-2/mri/rp2sub-0025415_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025415/ses-2/mri/rp3sub-0025415_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025415/ses-2/mri/t_sub-0025415_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/j3/MD5E-s284--e61276216cf174fa2c5eb0ec04953fd2.mat/MD5E-s284--e61276216cf174fa2c5eb0ec04953fd2.mat

LMU_3/sub-0025415/ses-2/mri/t_sub-0025415_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025415/ses-2/mri/thalamus_sub-0025415_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025415/ses-2/mri/thalamus_sub-0025415_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025415/ses-2/mri/wj_sub-0025415_ses-2_run-1_T1w.nii.gz

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