[DATALAD RUNCMD] Compute JHNU/sub-0025606/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025606/ses-1/anat/sub-0025606_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025606/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025606/ses-1/label/catROI_sub-0025606_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/Wv/MD5E-s57987--3fea104f33ecccd2bda09ffe24d62aea.mat/MD5E-s57987--3fea104f33ecccd2bda09ffe24d62aea.mat

JHNU/sub-0025606/ses-1/label/catROI_sub-0025606_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/Kp/MD5E-s188736--6c8e609b083ebc99a8bd1bf9f6cf1887.xml/MD5E-s188736--6c8e609b083ebc99a8bd1bf9f6cf1887.xml

JHNU/sub-0025606/ses-1/label/catROIs_sub-0025606_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kF/kQ/MD5E-s120054--9d2b3845c72908fa362f258b1656fbbe.mat/MD5E-s120054--9d2b3845c72908fa362f258b1656fbbe.mat

JHNU/sub-0025606/ses-1/label/catROIs_sub-0025606_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MV/G1/MD5E-s332155--ce2499ba3e7c384a4f79cc670dc16f6d.xml/MD5E-s332155--ce2499ba3e7c384a4f79cc670dc16f6d.xml

JHNU/sub-0025606/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025606/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/30/MD5E-s196232--c981e007904b7cc5ff6cddb73e0c96f2.nii.gz/MD5E-s196232--c981e007904b7cc5ff6cddb73e0c96f2.nii.gz

JHNU/sub-0025606/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025606/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/Xf/MD5E-s221038--a2aaa0d7f021a7802564c4674eb35682.nii.gz/MD5E-s221038--a2aaa0d7f021a7802564c4674eb35682.nii.gz

JHNU/sub-0025606/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025606/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/xP/MD5E-s277939--063692a3b5d8de933eea9b3923cdce74.nii.gz/MD5E-s277939--063692a3b5d8de933eea9b3923cdce74.nii.gz

JHNU/sub-0025606/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025606/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/8q/MD5E-s309231--3923645eda022b137805973a983475ef.nii.gz/MD5E-s309231--3923645eda022b137805973a983475ef.nii.gz

JHNU/sub-0025606/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

JHNU/sub-0025606/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qg/P8/MD5E-s26985--95ce1f1bd628ff392887aa87b7996803.nii.gz/MD5E-s26985--95ce1f1bd628ff392887aa87b7996803.nii.gz

JHNU/sub-0025606/ses-1/mri/aal3_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

JHNU/sub-0025606/ses-1/mri/aal3_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/pj/MD5E-s221244--deffafba2937bcd9b97c1cc7e32f9ebc.nii.gz/MD5E-s221244--deffafba2937bcd9b97c1cc7e32f9ebc.nii.gz

JHNU/sub-0025606/ses-1/mri/anatomy3_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

JHNU/sub-0025606/ses-1/mri/anatomy3_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/Q2/MD5E-s157030--93efac7eb6192aedeadd9617a0dab405.nii.gz/MD5E-s157030--93efac7eb6192aedeadd9617a0dab405.nii.gz

JHNU/sub-0025606/ses-1/mri/anon_misub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/V5/MD5E-s5519959--ce8a61dc3f6c26c7e36e2c994bdb8df8.nii.gz/MD5E-s5519959--ce8a61dc3f6c26c7e36e2c994bdb8df8.nii.gz

JHNU/sub-0025606/ses-1/mri/anon_msub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/4m/MD5E-s11787237--a468875cf21d71133bfedc203bd5ca39.nii.gz/MD5E-s11787237--a468875cf21d71133bfedc203bd5ca39.nii.gz

JHNU/sub-0025606/ses-1/mri/cat_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/zx/MD5E-s115276--629a339d3514e8e9baffb7c5ff94d1db.nii.gz/MD5E-s115276--629a339d3514e8e9baffb7c5ff94d1db.nii.gz

JHNU/sub-0025606/ses-1/mri/cobra_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025606/ses-1/mri/cobra_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/0W/MD5E-s53978--78ad99509bc1edc41df5ce45f8a1b2cd.nii.gz/MD5E-s53978--78ad99509bc1edc41df5ce45f8a1b2cd.nii.gz

JHNU/sub-0025606/ses-1/mri/hammers_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

JHNU/sub-0025606/ses-1/mri/hammers_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/04/MD5E-s172038--58ca9e3c7c595de65092b8a164f66d77.nii.gz/MD5E-s172038--58ca9e3c7c595de65092b8a164f66d77.nii.gz

JHNU/sub-0025606/ses-1/mri/ibsr_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025606/ses-1/mri/ibsr_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/pg/MD5E-s177499--8844c8d2fe9e9a73edda26cbd018a4f1.nii.gz/MD5E-s177499--8844c8d2fe9e9a73edda26cbd018a4f1.nii.gz

JHNU/sub-0025606/ses-1/mri/it_sub-0025606_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/w1/MD5E-s283--5eeacc63e46d9f2a11cc8a44878663f8.mat/MD5E-s283--5eeacc63e46d9f2a11cc8a44878663f8.mat

JHNU/sub-0025606/ses-1/mri/it_sub-0025606_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g3/xj/MD5E-s283--4377a2fdf226025cd87953c6df45b598.mat/MD5E-s283--4377a2fdf226025cd87953c6df45b598.mat

JHNU/sub-0025606/ses-1/mri/iy_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qz/V8/MD5E-s50395390--3256fcc821fd4b6f6b8614b51fcabbeb.nii.gz/MD5E-s50395390--3256fcc821fd4b6f6b8614b51fcabbeb.nii.gz

JHNU/sub-0025606/ses-1/mri/julichbrain_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

JHNU/sub-0025606/ses-1/mri/julichbrain_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fv/2w/MD5E-s235250--e2bea7686233f0c4b68ec22c01c38442.nii.gz/MD5E-s235250--e2bea7686233f0c4b68ec22c01c38442.nii.gz

JHNU/sub-0025606/ses-1/mri/lpba40_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

JHNU/sub-0025606/ses-1/mri/lpba40_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q2/XZ/MD5E-s170460--3f32a6ced0017edafc456d68c6793b20.nii.gz/MD5E-s170460--3f32a6ced0017edafc456d68c6793b20.nii.gz

JHNU/sub-0025606/ses-1/mri/m0wp1sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/10/MD5E-s2597398--9827fc7df9c010460465ef37e0783758.nii.gz/MD5E-s2597398--9827fc7df9c010460465ef37e0783758.nii.gz

JHNU/sub-0025606/ses-1/mri/m0wp2sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/kV/MD5E-s2293659--cce6f5d2075b92b3371eff742d5e9fb5.nii.gz/MD5E-s2293659--cce6f5d2075b92b3371eff742d5e9fb5.nii.gz

JHNU/sub-0025606/ses-1/mri/m0wp3sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025606/ses-1/mri/mori_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

JHNU/sub-0025606/ses-1/mri/mori_sub-0025606_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025606/ses-1/mri/mwp1sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/3F/MD5E-s2598129--a7962d16c005b9609c1d896eafe59489.nii.gz/MD5E-s2598129--a7962d16c005b9609c1d896eafe59489.nii.gz

JHNU/sub-0025606/ses-1/mri/mwp2sub-0025606_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025606/ses-1/mri/mwp3sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025606/ses-1/mri/neuromorphometrics_sub-0025606_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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JHNU/sub-0025606/ses-1/mri/neuromorphometrics_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025606/ses-1/mri/p0sub-0025606_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025606/ses-1/mri/p1sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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JHNU/sub-0025606/ses-1/mri/p2sub-0025606_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025606/ses-1/mri/p3sub-0025606_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025606/ses-1/mri/rp1sub-0025606_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025606/ses-1/mri/rp2sub-0025606_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025606/ses-1/mri/rp3sub-0025606_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025606/ses-1/mri/t_sub-0025606_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025606/ses-1/mri/t_sub-0025606_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025606/ses-1/mri/thalamus_sub-0025606_ses-1_run-1_T1w.csv

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JHNU/sub-0025606/ses-1/mri/thalamus_sub-0025606_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025606/ses-1/mri/wj_sub-0025606_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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