[DATALAD RUNCMD] Compute BNU_2/sub-0025969/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025969/ses-1/anat/sub-0025969_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025969/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025969/ses-1/label/catROI_sub-0025969_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/Mx/MD5E-s58154--5e99efe13f504383121e4f6af3996832.mat/MD5E-s58154--5e99efe13f504383121e4f6af3996832.mat

BNU_2/sub-0025969/ses-1/label/catROI_sub-0025969_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pp/5F/MD5E-s188595--883103f14589802b5df840776d8b64a3.xml/MD5E-s188595--883103f14589802b5df840776d8b64a3.xml

BNU_2/sub-0025969/ses-1/label/catROIs_sub-0025969_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/Jw/MD5E-s120037--98fe293ae4d1f2f1b80fc791305fd7e7.mat/MD5E-s120037--98fe293ae4d1f2f1b80fc791305fd7e7.mat

BNU_2/sub-0025969/ses-1/label/catROIs_sub-0025969_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/83/kw/MD5E-s332094--865bf9f62ebfc289188eb900d4042686.xml/MD5E-s332094--865bf9f62ebfc289188eb900d4042686.xml

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/jv/MD5E-s156770--9987d9e734eee8ed88c444e5a7df01a9.nii.gz/MD5E-s156770--9987d9e734eee8ed88c444e5a7df01a9.nii.gz

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/xq/MD5E-s176803--f2f29a40eeb29ac900768129139ea85e.nii.gz/MD5E-s176803--f2f29a40eeb29ac900768129139ea85e.nii.gz

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/mV/MD5E-s234619--4283b7bc09f9f3cb68db7e5cf632c1a3.nii.gz/MD5E-s234619--4283b7bc09f9f3cb68db7e5cf632c1a3.nii.gz

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025969/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/zV/MD5E-s261625--9c546de1933d97bf2532f5c68dafd17a.nii.gz/MD5E-s261625--9c546de1933d97bf2532f5c68dafd17a.nii.gz

BNU_2/sub-0025969/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025969/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/v6/MD5E-s19478--2e2ea147099777dd707a922282c954b3.nii.gz/MD5E-s19478--2e2ea147099777dd707a922282c954b3.nii.gz

BNU_2/sub-0025969/ses-1/mri/aal3_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025969/ses-1/mri/aal3_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/k0/MD5E-s175313--be4604bcb2a2c29722778940e70313da.nii.gz/MD5E-s175313--be4604bcb2a2c29722778940e70313da.nii.gz

BNU_2/sub-0025969/ses-1/mri/anatomy3_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025969/ses-1/mri/anatomy3_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/5K/MD5E-s124595--6aa014e9d5c8e7a21456a1fcf9b610df.nii.gz/MD5E-s124595--6aa014e9d5c8e7a21456a1fcf9b610df.nii.gz

BNU_2/sub-0025969/ses-1/mri/anon_misub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/Mg/MD5E-s4400816--6cfe25e6d89ed48f85465602fc5d7e9d.nii.gz/MD5E-s4400816--6cfe25e6d89ed48f85465602fc5d7e9d.nii.gz

BNU_2/sub-0025969/ses-1/mri/anon_msub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/Qq/MD5E-s9339819--ceddbc906751df7a993c06f081a6ed27.nii.gz/MD5E-s9339819--ceddbc906751df7a993c06f081a6ed27.nii.gz

BNU_2/sub-0025969/ses-1/mri/cat_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/wP/MD5E-s91049--6e350c5e88e363c86b02b4a2f68b3de1.nii.gz/MD5E-s91049--6e350c5e88e363c86b02b4a2f68b3de1.nii.gz

BNU_2/sub-0025969/ses-1/mri/cobra_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025969/ses-1/mri/cobra_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/36/MD5E-s39541--bf4ec10d2c77cab5f2acb1d7e83e9096.nii.gz/MD5E-s39541--bf4ec10d2c77cab5f2acb1d7e83e9096.nii.gz

BNU_2/sub-0025969/ses-1/mri/hammers_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025969/ses-1/mri/hammers_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/xq/MD5E-s137984--0fc27b59997da2b4e54fdf412c3d2528.nii.gz/MD5E-s137984--0fc27b59997da2b4e54fdf412c3d2528.nii.gz

BNU_2/sub-0025969/ses-1/mri/ibsr_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025969/ses-1/mri/ibsr_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/4P/MD5E-s145603--efe700b5c017708d565b7358bc6c1297.nii.gz/MD5E-s145603--efe700b5c017708d565b7358bc6c1297.nii.gz

BNU_2/sub-0025969/ses-1/mri/it_sub-0025969_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/1J/MD5E-s283--129eebd54bebb2b0e59929f6b1cf470b.mat/MD5E-s283--129eebd54bebb2b0e59929f6b1cf470b.mat

BNU_2/sub-0025969/ses-1/mri/it_sub-0025969_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/44/MD5E-s283--2c1ab2411e1a61ddfb1d3b255cd40d16.mat/MD5E-s283--2c1ab2411e1a61ddfb1d3b255cd40d16.mat

BNU_2/sub-0025969/ses-1/mri/iy_sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/43/MD5E-s37930384--0ad2ad09dbfba2290346ec8b366ab0df.nii.gz/MD5E-s37930384--0ad2ad09dbfba2290346ec8b366ab0df.nii.gz

BNU_2/sub-0025969/ses-1/mri/julichbrain_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025969/ses-1/mri/julichbrain_sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/lpba40_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025969/ses-1/mri/lpba40_sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/m0wp1sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/Xz/MD5E-s2577046--3d1d93d9c6d06417811a65ccaea711f3.nii.gz/MD5E-s2577046--3d1d93d9c6d06417811a65ccaea711f3.nii.gz

BNU_2/sub-0025969/ses-1/mri/m0wp2sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025969/ses-1/mri/m0wp3sub-0025969_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/Mw/MD5E-s2421762--a3111d9c6061d0652d18ed8b907d9d14.nii.gz/MD5E-s2421762--a3111d9c6061d0652d18ed8b907d9d14.nii.gz

BNU_2/sub-0025969/ses-1/mri/mori_sub-0025969_ses-1_run-1_T1w.csv

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BNU_2/sub-0025969/ses-1/mri/mori_sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/mwp1sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/mwp2sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/mwp3sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/neuromorphometrics_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025969/ses-1/mri/neuromorphometrics_sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/p0sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/p1sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/p2sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/p3sub-0025969_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025969/ses-1/mri/rp1sub-0025969_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025969/ses-1/mri/rp2sub-0025969_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025969/ses-1/mri/rp3sub-0025969_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025969/ses-1/mri/t_sub-0025969_ses-1_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025969/ses-1/mri/t_sub-0025969_ses-1_run-1_T1w_rigid_reorient.mat

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BNU_2/sub-0025969/ses-1/mri/thalamus_sub-0025969_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025969/ses-1/mri/thalamus_sub-0025969_ses-1_run-1_T1w.nii.gz

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