[DATALAD RUNCMD] Compute BNU_2/sub-0025960/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025960/ses-1/anat/sub-0025960_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025960/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025960/ses-1/label/catROI_sub-0025960_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/V9/MD5E-s58077--9e0f7fa25614761017d01a7586c22ed1.mat/MD5E-s58077--9e0f7fa25614761017d01a7586c22ed1.mat

BNU_2/sub-0025960/ses-1/label/catROI_sub-0025960_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5g/qX/MD5E-s188852--0aebba3cc7242856ad5184df324576a4.xml/MD5E-s188852--0aebba3cc7242856ad5184df324576a4.xml

BNU_2/sub-0025960/ses-1/label/catROIs_sub-0025960_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/79/MD5E-s120131--d0ae862d69574a03b155bd61f2570f35.mat/MD5E-s120131--d0ae862d69574a03b155bd61f2570f35.mat

BNU_2/sub-0025960/ses-1/label/catROIs_sub-0025960_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/f8/MD5E-s332160--d54d0327f529fe8d2b719cf317f6f5e0.xml/MD5E-s332160--d54d0327f529fe8d2b719cf317f6f5e0.xml

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/Z2/MD5E-s145282--e624de0539d60c39423eee6e0096625c.nii.gz/MD5E-s145282--e624de0539d60c39423eee6e0096625c.nii.gz

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/Q6/MD5E-s161075--48c0a3dc021ab496e01a5fe1b3bf5fc4.nii.gz/MD5E-s161075--48c0a3dc021ab496e01a5fe1b3bf5fc4.nii.gz

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/Zw/MD5E-s216010--7109cf4fb104e425bf8d58ae67c8fc2e.nii.gz/MD5E-s216010--7109cf4fb104e425bf8d58ae67c8fc2e.nii.gz

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025960/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/PZ/MD5E-s237462--f8d7fbe242fefaa1b3b1cab1f68557fd.nii.gz/MD5E-s237462--f8d7fbe242fefaa1b3b1cab1f68557fd.nii.gz

BNU_2/sub-0025960/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025960/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/Z9/MD5E-s18858--3335aebb4b903ac52d4347024b7a4ca8.nii.gz/MD5E-s18858--3335aebb4b903ac52d4347024b7a4ca8.nii.gz

BNU_2/sub-0025960/ses-1/mri/aal3_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025960/ses-1/mri/aal3_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/GJ/MD5E-s162609--85ba2318200d190be95138decd8b464e.nii.gz/MD5E-s162609--85ba2318200d190be95138decd8b464e.nii.gz

BNU_2/sub-0025960/ses-1/mri/anatomy3_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025960/ses-1/mri/anatomy3_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/7M/MD5E-s116195--76ebc7afabc1c90ea1985f3da43b0938.nii.gz/MD5E-s116195--76ebc7afabc1c90ea1985f3da43b0938.nii.gz

BNU_2/sub-0025960/ses-1/mri/anon_misub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/jF/MD5E-s3883618--4873383296882ba44890af6da5e3bc9a.nii.gz/MD5E-s3883618--4873383296882ba44890af6da5e3bc9a.nii.gz

BNU_2/sub-0025960/ses-1/mri/anon_msub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k3/vj/MD5E-s7416552--628655d805b7bb71281ed06584f1505b.nii.gz/MD5E-s7416552--628655d805b7bb71281ed06584f1505b.nii.gz

BNU_2/sub-0025960/ses-1/mri/cat_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/x3/MD5E-s86770--bfbcb048cfac2a31782d36c4c86c024a.nii.gz/MD5E-s86770--bfbcb048cfac2a31782d36c4c86c024a.nii.gz

BNU_2/sub-0025960/ses-1/mri/cobra_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025960/ses-1/mri/cobra_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/xk/MD5E-s40235--8f1d9710920bb4fe5947ab9f7dbbb7a6.nii.gz/MD5E-s40235--8f1d9710920bb4fe5947ab9f7dbbb7a6.nii.gz

BNU_2/sub-0025960/ses-1/mri/hammers_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025960/ses-1/mri/hammers_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/GX/MD5E-s127749--bb60e251289fd80951590297f94555e2.nii.gz/MD5E-s127749--bb60e251289fd80951590297f94555e2.nii.gz

BNU_2/sub-0025960/ses-1/mri/ibsr_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025960/ses-1/mri/ibsr_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0v/w1/MD5E-s134428--6dad556990d0cf63e73b0fce62a45115.nii.gz/MD5E-s134428--6dad556990d0cf63e73b0fce62a45115.nii.gz

BNU_2/sub-0025960/ses-1/mri/it_sub-0025960_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/Q8/MD5E-s283--f8e7756c3780a63e22cbe44c7855cd96.mat/MD5E-s283--f8e7756c3780a63e22cbe44c7855cd96.mat

BNU_2/sub-0025960/ses-1/mri/it_sub-0025960_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m2/z9/MD5E-s282--c3ac1a96e3326c9ea1e20296a2b35f3f.mat/MD5E-s282--c3ac1a96e3326c9ea1e20296a2b35f3f.mat

BNU_2/sub-0025960/ses-1/mri/iy_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/81/MD5E-s34795950--4cec345edb096ea9c017c057b1266d2f.nii.gz/MD5E-s34795950--4cec345edb096ea9c017c057b1266d2f.nii.gz

BNU_2/sub-0025960/ses-1/mri/julichbrain_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025960/ses-1/mri/julichbrain_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/K4/MD5E-s171408--cee25b325be8b3e3ca3b082cf7ecd0aa.nii.gz/MD5E-s171408--cee25b325be8b3e3ca3b082cf7ecd0aa.nii.gz

BNU_2/sub-0025960/ses-1/mri/lpba40_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025960/ses-1/mri/lpba40_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/vp/MD5E-s125107--b098aaef38563d1eaee83d7e8ee87327.nii.gz/MD5E-s125107--b098aaef38563d1eaee83d7e8ee87327.nii.gz

BNU_2/sub-0025960/ses-1/mri/m0wp1sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/67/MD5E-s2582657--3f764b74ce99ac985769dbadaaa84a48.nii.gz/MD5E-s2582657--3f764b74ce99ac985769dbadaaa84a48.nii.gz

BNU_2/sub-0025960/ses-1/mri/m0wp2sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/0W/MD5E-s2275401--52a35384b63d9faf17983dbe7db13f82.nii.gz/MD5E-s2275401--52a35384b63d9faf17983dbe7db13f82.nii.gz

BNU_2/sub-0025960/ses-1/mri/m0wp3sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/PW/MD5E-s2464831--e9cd1d1b580b1afcac3fb6dd0606a82d.nii.gz/MD5E-s2464831--e9cd1d1b580b1afcac3fb6dd0606a82d.nii.gz

BNU_2/sub-0025960/ses-1/mri/mori_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025960/ses-1/mri/mori_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/wF/MD5E-s149929--5832f8863f4d293bb51b07958adb756a.nii.gz/MD5E-s149929--5832f8863f4d293bb51b07958adb756a.nii.gz

BNU_2/sub-0025960/ses-1/mri/mwp1sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025960/ses-1/mri/mwp2sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JW/KG/MD5E-s2273247--5997c18542c3dddd978e87e8dcbfb273.nii.gz/MD5E-s2273247--5997c18542c3dddd978e87e8dcbfb273.nii.gz

BNU_2/sub-0025960/ses-1/mri/mwp3sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025960/ses-1/mri/neuromorphometrics_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025960/ses-1/mri/neuromorphometrics_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025960/ses-1/mri/p0sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/wp/MD5E-s747005--f4ac25fc026e67036ee4e27475e1ebb9.nii.gz/MD5E-s747005--f4ac25fc026e67036ee4e27475e1ebb9.nii.gz

BNU_2/sub-0025960/ses-1/mri/p1sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025960/ses-1/mri/p2sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/Pm/MD5E-s520194--8517dda010eaa7655964fe906ba3ea38.nii.gz/MD5E-s520194--8517dda010eaa7655964fe906ba3ea38.nii.gz

BNU_2/sub-0025960/ses-1/mri/p3sub-0025960_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025960/ses-1/mri/rp1sub-0025960_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025960/ses-1/mri/rp2sub-0025960_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025960/ses-1/mri/rp3sub-0025960_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025960/ses-1/mri/t_sub-0025960_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025960/ses-1/mri/t_sub-0025960_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J0/p7/MD5E-s283--f2c986a7ee4931ea21eae7121ebda577.mat/MD5E-s283--f2c986a7ee4931ea21eae7121ebda577.mat

BNU_2/sub-0025960/ses-1/mri/thalamus_sub-0025960_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025960/ses-1/mri/thalamus_sub-0025960_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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