[DATALAD RUNCMD] Compute IACAS/sub-0025474/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025474/ses-2/anat/sub-0025474_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025474/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025474/ses-2/label/catROI_sub-0025474_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/M4/MD5E-s57870--f6c19365bd1f2c6352d27448d6c40c3a.mat/MD5E-s57870--f6c19365bd1f2c6352d27448d6c40c3a.mat

IACAS/sub-0025474/ses-2/label/catROI_sub-0025474_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/x8/MD5E-s188819--410475e002fdc4b2537fe92d52b66845.xml/MD5E-s188819--410475e002fdc4b2537fe92d52b66845.xml

IACAS/sub-0025474/ses-2/label/catROIs_sub-0025474_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/8f/MD5E-s120174--fbf4ac8ffda07fbcb1f8b456745943f3.mat/MD5E-s120174--fbf4ac8ffda07fbcb1f8b456745943f3.mat

IACAS/sub-0025474/ses-2/label/catROIs_sub-0025474_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/8v/MD5E-s332184--bbe3f834f7639b2338d1faf527f876c2.xml/MD5E-s332184--bbe3f834f7639b2338d1faf527f876c2.xml

IACAS/sub-0025474/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025474/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/K5/MD5E-s161690--e9033d3af4ca7a81a77d566244e3687a.nii.gz/MD5E-s161690--e9033d3af4ca7a81a77d566244e3687a.nii.gz

IACAS/sub-0025474/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025474/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/pW/MD5E-s179606--d2bcc0c62b85cc0adeabe2faa1dcfc11.nii.gz/MD5E-s179606--d2bcc0c62b85cc0adeabe2faa1dcfc11.nii.gz

IACAS/sub-0025474/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025474/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/Vm/MD5E-s242421--814e905c5ae71ff4991396f17f18f6e4.nii.gz/MD5E-s242421--814e905c5ae71ff4991396f17f18f6e4.nii.gz

IACAS/sub-0025474/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025474/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/8w/MD5E-s268112--3ab9825dfdfde878bc6f0797a056cf98.nii.gz/MD5E-s268112--3ab9825dfdfde878bc6f0797a056cf98.nii.gz

IACAS/sub-0025474/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025474/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/mf/MD5E-s24871--635847640401ea5f63a85dfad566aeb7.nii.gz/MD5E-s24871--635847640401ea5f63a85dfad566aeb7.nii.gz

IACAS/sub-0025474/ses-2/mri/aal3_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025474/ses-2/mri/aal3_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/9f/MD5E-s181078--ebf701f7f6fcbf96d55364d04f3badf5.nii.gz/MD5E-s181078--ebf701f7f6fcbf96d55364d04f3badf5.nii.gz

IACAS/sub-0025474/ses-2/mri/anatomy3_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025474/ses-2/mri/anatomy3_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/M0/MD5E-s131638--863881e2892d6868969bf4fceadec2c7.nii.gz/MD5E-s131638--863881e2892d6868969bf4fceadec2c7.nii.gz

IACAS/sub-0025474/ses-2/mri/anon_misub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x7/5V/MD5E-s9455775--b6da87a5193305d7e5002dcb1c4d2c4a.nii.gz/MD5E-s9455775--b6da87a5193305d7e5002dcb1c4d2c4a.nii.gz

IACAS/sub-0025474/ses-2/mri/anon_msub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PQ/Xm/MD5E-s10883172--b42b2d598a3a10c7cbadb2c650ce041c.nii.gz/MD5E-s10883172--b42b2d598a3a10c7cbadb2c650ce041c.nii.gz

IACAS/sub-0025474/ses-2/mri/cat_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/w5/MD5E-s100030--ed1901a39d84472be3c9004df1dbca81.nii.gz/MD5E-s100030--ed1901a39d84472be3c9004df1dbca81.nii.gz

IACAS/sub-0025474/ses-2/mri/cobra_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025474/ses-2/mri/cobra_sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/hammers_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025474/ses-2/mri/hammers_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZM/mk/MD5E-s142587--b1455585c1807840eb1271116d002f7b.nii.gz/MD5E-s142587--b1455585c1807840eb1271116d002f7b.nii.gz

IACAS/sub-0025474/ses-2/mri/ibsr_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025474/ses-2/mri/ibsr_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025474/ses-2/mri/it_sub-0025474_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/M6/MD5E-s282--13a8347a54441d3f2f953096cb4cdebe.mat/MD5E-s282--13a8347a54441d3f2f953096cb4cdebe.mat

IACAS/sub-0025474/ses-2/mri/it_sub-0025474_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/wP/MD5E-s282--6374cc27945542b1c62bafa39da37d68.mat/MD5E-s282--6374cc27945542b1c62bafa39da37d68.mat

IACAS/sub-0025474/ses-2/mri/iy_sub-0025474_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/Kk/MD5E-s46603424--24269e9106edf71809af78a11e5674fa.nii.gz/MD5E-s46603424--24269e9106edf71809af78a11e5674fa.nii.gz

IACAS/sub-0025474/ses-2/mri/julichbrain_sub-0025474_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025474/ses-2/mri/julichbrain_sub-0025474_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/64/82/MD5E-s192864--79422ff8c2cddf5c7238313e2d54d81f.nii.gz/MD5E-s192864--79422ff8c2cddf5c7238313e2d54d81f.nii.gz

IACAS/sub-0025474/ses-2/mri/lpba40_sub-0025474_ses-2_run-1_T1w.csv

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IACAS/sub-0025474/ses-2/mri/lpba40_sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/m0wp1sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/m0wp2sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/m0wp3sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/mori_sub-0025474_ses-2_run-1_T1w.csv

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IACAS/sub-0025474/ses-2/mri/mori_sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/mwp1sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/mwp2sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/mwp3sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/neuromorphometrics_sub-0025474_ses-2_run-1_T1w.csv

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IACAS/sub-0025474/ses-2/mri/neuromorphometrics_sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/p0sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/p1sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/p2sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/p3sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/rp1sub-0025474_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025474/ses-2/mri/rp2sub-0025474_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025474/ses-2/mri/rp3sub-0025474_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025474/ses-2/mri/t_sub-0025474_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025474/ses-2/mri/t_sub-0025474_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025474/ses-2/mri/thalamus_sub-0025474_ses-2_run-1_T1w.csv

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IACAS/sub-0025474/ses-2/mri/thalamus_sub-0025474_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025474/ses-2/mri/wj_sub-0025474_ses-2_run-1_T1w.nii.gz

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