[DATALAD RUNCMD] Compute LMU_3/sub-0025409/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025409/ses-2/anat/sub-0025409_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025409/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025409/ses-2/label/catROI_sub-0025409_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/w4/MD5E-s57833--26f4a98cc2e1e2a5ac9ccc30e2877ef3.mat/MD5E-s57833--26f4a98cc2e1e2a5ac9ccc30e2877ef3.mat

LMU_3/sub-0025409/ses-2/label/catROI_sub-0025409_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/z3/MD5E-s189115--0d7b0650df14796959d0ed80df750ee9.xml/MD5E-s189115--0d7b0650df14796959d0ed80df750ee9.xml

LMU_3/sub-0025409/ses-2/label/catROIs_sub-0025409_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/g1/MD5E-s120112--b775e8991785f6c18d0008baf8aa0ac6.mat/MD5E-s120112--b775e8991785f6c18d0008baf8aa0ac6.mat

LMU_3/sub-0025409/ses-2/label/catROIs_sub-0025409_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/VM/MD5E-s332151--537b67e84a807b6928d9543e85f2e800.xml/MD5E-s332151--537b67e84a807b6928d9543e85f2e800.xml

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/Z2/MD5E-s159679--39f67fd06f6360532284f7804b76dd2f.nii.gz/MD5E-s159679--39f67fd06f6360532284f7804b76dd2f.nii.gz

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/2v/MD5E-s178042--f28ff698af81d35d3a8281040a3f6bfc.nii.gz/MD5E-s178042--f28ff698af81d35d3a8281040a3f6bfc.nii.gz

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/P5/MD5E-s242480--4d7272e800e57b24aad9ef1a77998eb0.nii.gz/MD5E-s242480--4d7272e800e57b24aad9ef1a77998eb0.nii.gz

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025409/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/03/MD5E-s268724--3a2203b85805db6036e8dbde3c18717a.nii.gz/MD5E-s268724--3a2203b85805db6036e8dbde3c18717a.nii.gz

LMU_3/sub-0025409/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025409/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xk/0X/MD5E-s22183--71a13b8547d98a503b56181c4754cee9.nii.gz/MD5E-s22183--71a13b8547d98a503b56181c4754cee9.nii.gz

LMU_3/sub-0025409/ses-2/mri/aal3_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025409/ses-2/mri/aal3_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/5K/MD5E-s181433--02ff0b787c355251d14a216abbe5296b.nii.gz/MD5E-s181433--02ff0b787c355251d14a216abbe5296b.nii.gz

LMU_3/sub-0025409/ses-2/mri/anatomy3_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025409/ses-2/mri/anatomy3_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VQ/jk/MD5E-s128988--264a887388735186d0ec0acefe229825.nii.gz/MD5E-s128988--264a887388735186d0ec0acefe229825.nii.gz

LMU_3/sub-0025409/ses-2/mri/anon_misub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/9Z/MD5E-s4058374--f48fa906e58c04ad7c0bf3142e10e312.nii.gz/MD5E-s4058374--f48fa906e58c04ad7c0bf3142e10e312.nii.gz

LMU_3/sub-0025409/ses-2/mri/anon_msub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/8Z/MD5E-s8378618--d3cca2cf404ad4124e0787082f7a5826.nii.gz/MD5E-s8378618--d3cca2cf404ad4124e0787082f7a5826.nii.gz

LMU_3/sub-0025409/ses-2/mri/cat_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/mQ/MD5E-s101307--f75310935241e53166d38b0739d6f565.nii.gz/MD5E-s101307--f75310935241e53166d38b0739d6f565.nii.gz

LMU_3/sub-0025409/ses-2/mri/cobra_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025409/ses-2/mri/cobra_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/Mm/MD5E-s43653--c811009fca931de41ced40e8a12876f3.nii.gz/MD5E-s43653--c811009fca931de41ced40e8a12876f3.nii.gz

LMU_3/sub-0025409/ses-2/mri/hammers_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025409/ses-2/mri/hammers_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/04/MD5E-s141863--3360739e5ad86b4c954e5eb04aace436.nii.gz/MD5E-s141863--3360739e5ad86b4c954e5eb04aace436.nii.gz

LMU_3/sub-0025409/ses-2/mri/ibsr_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025409/ses-2/mri/ibsr_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qj/02/MD5E-s151289--28fe1cd17264116f42120a4905a0e7ea.nii.gz/MD5E-s151289--28fe1cd17264116f42120a4905a0e7ea.nii.gz

LMU_3/sub-0025409/ses-2/mri/it_sub-0025409_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/32/MD5E-s284--ab4d8b6d7688f166d7040fde7aeae0fc.mat/MD5E-s284--ab4d8b6d7688f166d7040fde7aeae0fc.mat

LMU_3/sub-0025409/ses-2/mri/it_sub-0025409_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/zv/MD5E-s283--99a68f7ad6b1a00bf3b9767166300dcc.mat/MD5E-s283--99a68f7ad6b1a00bf3b9767166300dcc.mat

LMU_3/sub-0025409/ses-2/mri/iy_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/5X/MD5E-s44728052--5857a0e9f6c3a51318cdb35678d52f5d.nii.gz/MD5E-s44728052--5857a0e9f6c3a51318cdb35678d52f5d.nii.gz

LMU_3/sub-0025409/ses-2/mri/julichbrain_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025409/ses-2/mri/julichbrain_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/4m/MD5E-s191773--adcd51a2fe4ff8ce1d23c7936d4934ae.nii.gz/MD5E-s191773--adcd51a2fe4ff8ce1d23c7936d4934ae.nii.gz

LMU_3/sub-0025409/ses-2/mri/lpba40_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025409/ses-2/mri/lpba40_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k3/K0/MD5E-s138832--fe71110d0494294da6613cc2c91718a9.nii.gz/MD5E-s138832--fe71110d0494294da6613cc2c91718a9.nii.gz

LMU_3/sub-0025409/ses-2/mri/m0wp1sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/GV/MD5E-s2579813--4131a58db15a17fdece8c1a0d33cf496.nii.gz/MD5E-s2579813--4131a58db15a17fdece8c1a0d33cf496.nii.gz

LMU_3/sub-0025409/ses-2/mri/m0wp2sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/47/MD5E-s2296201--5838e206d892b960c9d7648cbb2038aa.nii.gz/MD5E-s2296201--5838e206d892b960c9d7648cbb2038aa.nii.gz

LMU_3/sub-0025409/ses-2/mri/m0wp3sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3g/Fj/MD5E-s2613656--9bbfef4c39a873a8c73c1966fa9c9f94.nii.gz/MD5E-s2613656--9bbfef4c39a873a8c73c1966fa9c9f94.nii.gz

LMU_3/sub-0025409/ses-2/mri/mori_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025409/ses-2/mri/mori_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/VX/MD5E-s167747--fa51bf6c85b2b9abf29dc533da60c7b7.nii.gz/MD5E-s167747--fa51bf6c85b2b9abf29dc533da60c7b7.nii.gz

LMU_3/sub-0025409/ses-2/mri/mwp1sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/GZ/MD5E-s2585749--7c55454544b72c09c77659b2130b6c19.nii.gz/MD5E-s2585749--7c55454544b72c09c77659b2130b6c19.nii.gz

LMU_3/sub-0025409/ses-2/mri/mwp2sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/K3/MD5E-s2298537--ce54708df135fe26ac15391958b008b9.nii.gz/MD5E-s2298537--ce54708df135fe26ac15391958b008b9.nii.gz

LMU_3/sub-0025409/ses-2/mri/mwp3sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/7k/MD5E-s2610493--410e5159ce4ce84c85fa7142930337ff.nii.gz/MD5E-s2610493--410e5159ce4ce84c85fa7142930337ff.nii.gz

LMU_3/sub-0025409/ses-2/mri/neuromorphometrics_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025409/ses-2/mri/neuromorphometrics_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/mf/MD5E-s192917--70a4bab23d9e18145a9222f9ed52b047.nii.gz/MD5E-s192917--70a4bab23d9e18145a9222f9ed52b047.nii.gz

LMU_3/sub-0025409/ses-2/mri/p0sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/f7/MD5E-s613491--561caea23d19b0981e16f88eb43ec055.nii.gz/MD5E-s613491--561caea23d19b0981e16f88eb43ec055.nii.gz

LMU_3/sub-0025409/ses-2/mri/p1sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/0v/MD5E-s640964--ce3950438e70f4ec7896a928b184c0f2.nii.gz/MD5E-s640964--ce3950438e70f4ec7896a928b184c0f2.nii.gz

LMU_3/sub-0025409/ses-2/mri/p2sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/PG/MD5E-s418533--904a3b1580241b7be2de4c1bc044bf9e.nii.gz/MD5E-s418533--904a3b1580241b7be2de4c1bc044bf9e.nii.gz

LMU_3/sub-0025409/ses-2/mri/p3sub-0025409_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025409/ses-2/mri/rp1sub-0025409_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025409/ses-2/mri/rp2sub-0025409_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025409/ses-2/mri/rp3sub-0025409_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025409/ses-2/mri/t_sub-0025409_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025409/ses-2/mri/t_sub-0025409_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/fq/MD5E-s283--29f0a4fd184c6dad69cfa7345427a206.mat/MD5E-s283--29f0a4fd184c6dad69cfa7345427a206.mat

LMU_3/sub-0025409/ses-2/mri/thalamus_sub-0025409_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025409/ses-2/mri/thalamus_sub-0025409_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025409/ses-2/mri/wj_sub-0025409_ses-2_run-1_T1w.nii.gz

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