[DATALAD RUNCMD] Compute BNU_2/sub-0025966/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025966/ses-1/anat/sub-0025966_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025966/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025966/ses-1/label/catROI_sub-0025966_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/4f/MD5E-s58143--25d4307b3502078fbb99d065d51cf44c.mat/MD5E-s58143--25d4307b3502078fbb99d065d51cf44c.mat

BNU_2/sub-0025966/ses-1/label/catROI_sub-0025966_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fx/50/MD5E-s188830--d0ffac6a2661d242ec56ec9f8119820d.xml/MD5E-s188830--d0ffac6a2661d242ec56ec9f8119820d.xml

BNU_2/sub-0025966/ses-1/label/catROIs_sub-0025966_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/4x/MD5E-s120104--62934c8a15f19f3d12bbe4a7437a4b5a.mat/MD5E-s120104--62934c8a15f19f3d12bbe4a7437a4b5a.mat

BNU_2/sub-0025966/ses-1/label/catROIs_sub-0025966_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/1j/MD5E-s332120--3c14a36f52a800e787c864f2806df86a.xml/MD5E-s332120--3c14a36f52a800e787c864f2806df86a.xml

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/m1/MD5E-s158263--163799ae29dbc0422c0ba8cb55725cf5.nii.gz/MD5E-s158263--163799ae29dbc0422c0ba8cb55725cf5.nii.gz

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/3m/MD5E-s178264--5d0b429adc95cbccf2f235b895a17b7e.nii.gz/MD5E-s178264--5d0b429adc95cbccf2f235b895a17b7e.nii.gz

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/q0/MD5E-s237116--263f0bd9f131f1b22d026e9f231990a9.nii.gz/MD5E-s237116--263f0bd9f131f1b22d026e9f231990a9.nii.gz

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025966/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/2Q/MD5E-s264355--c520807b661a6c67094534fee19ce433.nii.gz/MD5E-s264355--c520807b661a6c67094534fee19ce433.nii.gz

BNU_2/sub-0025966/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025966/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/11/MD5E-s21104--6c747f07245f94d68e51764ad5a144e7.nii.gz/MD5E-s21104--6c747f07245f94d68e51764ad5a144e7.nii.gz

BNU_2/sub-0025966/ses-1/mri/aal3_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025966/ses-1/mri/aal3_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/kx/MD5E-s182208--a45f639bee190e294be4a314db927344.nii.gz/MD5E-s182208--a45f639bee190e294be4a314db927344.nii.gz

BNU_2/sub-0025966/ses-1/mri/anatomy3_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025966/ses-1/mri/anatomy3_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/Pg/MD5E-s129033--d1b3b794f54ec92a5e75da2f0f4d2019.nii.gz/MD5E-s129033--d1b3b794f54ec92a5e75da2f0f4d2019.nii.gz

BNU_2/sub-0025966/ses-1/mri/anon_misub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f2/MW/MD5E-s4690440--9e9584cf784fff4c53951bc68649a973.nii.gz/MD5E-s4690440--9e9584cf784fff4c53951bc68649a973.nii.gz

BNU_2/sub-0025966/ses-1/mri/anon_msub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/p3/MD5E-s9544950--a0d5e95d9271b15a37f262d5d2ac91e9.nii.gz/MD5E-s9544950--a0d5e95d9271b15a37f262d5d2ac91e9.nii.gz

BNU_2/sub-0025966/ses-1/mri/cat_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/2x/MD5E-s99080--ae43a5a6ed5b15b62b5413159ed081b6.nii.gz/MD5E-s99080--ae43a5a6ed5b15b62b5413159ed081b6.nii.gz

BNU_2/sub-0025966/ses-1/mri/cobra_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025966/ses-1/mri/cobra_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/8J/MD5E-s45944--3f18e5c09d1d7ec0155ac83ffe0a28b6.nii.gz/MD5E-s45944--3f18e5c09d1d7ec0155ac83ffe0a28b6.nii.gz

BNU_2/sub-0025966/ses-1/mri/hammers_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025966/ses-1/mri/hammers_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/8k/MD5E-s144960--19b027f8236dbda1ffb29db220e288c7.nii.gz/MD5E-s144960--19b027f8236dbda1ffb29db220e288c7.nii.gz

BNU_2/sub-0025966/ses-1/mri/ibsr_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025966/ses-1/mri/ibsr_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/zf/MD5E-s151619--6fb1fea650d2a57a244f96b17c91b310.nii.gz/MD5E-s151619--6fb1fea650d2a57a244f96b17c91b310.nii.gz

BNU_2/sub-0025966/ses-1/mri/it_sub-0025966_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/Jz/MD5E-s284--923ddfc7bc6aa7c3759f132326f5bdec.mat/MD5E-s284--923ddfc7bc6aa7c3759f132326f5bdec.mat

BNU_2/sub-0025966/ses-1/mri/it_sub-0025966_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/Qf/MD5E-s284--fae2f9466905401b0cf28eba6cf146aa.mat/MD5E-s284--fae2f9466905401b0cf28eba6cf146aa.mat

BNU_2/sub-0025966/ses-1/mri/iy_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fv/p0/MD5E-s39838809--e6f77445c791b5108f90a216d085ed3d.nii.gz/MD5E-s39838809--e6f77445c791b5108f90a216d085ed3d.nii.gz

BNU_2/sub-0025966/ses-1/mri/julichbrain_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025966/ses-1/mri/julichbrain_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/kf/MD5E-s192557--8cc08d6bc3d9879b6ab928ebf8cbb8d8.nii.gz/MD5E-s192557--8cc08d6bc3d9879b6ab928ebf8cbb8d8.nii.gz

BNU_2/sub-0025966/ses-1/mri/lpba40_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025966/ses-1/mri/lpba40_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/2x/MD5E-s140987--4d76f549d3fc9446e96b187d855983e9.nii.gz/MD5E-s140987--4d76f549d3fc9446e96b187d855983e9.nii.gz

BNU_2/sub-0025966/ses-1/mri/m0wp1sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/WK/MD5E-s2588018--9a472d1849a71b07abf6fe8057cd9c1f.nii.gz/MD5E-s2588018--9a472d1849a71b07abf6fe8057cd9c1f.nii.gz

BNU_2/sub-0025966/ses-1/mri/m0wp2sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/vz/MD5E-s2277318--34f600c86b1e709991068eb2d231a1f5.nii.gz/MD5E-s2277318--34f600c86b1e709991068eb2d231a1f5.nii.gz

BNU_2/sub-0025966/ses-1/mri/m0wp3sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/X5/MD5E-s2511353--9234686dfa2918ea02ce4329d3ff4198.nii.gz/MD5E-s2511353--9234686dfa2918ea02ce4329d3ff4198.nii.gz

BNU_2/sub-0025966/ses-1/mri/mori_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025966/ses-1/mri/mori_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/MK/MD5E-s167053--ee5831216c7e22193f21a2d21d99c62a.nii.gz/MD5E-s167053--ee5831216c7e22193f21a2d21d99c62a.nii.gz

BNU_2/sub-0025966/ses-1/mri/mwp1sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6x/PQ/MD5E-s2586280--0e3700dfd9533f040056ee53fb60695b.nii.gz/MD5E-s2586280--0e3700dfd9533f040056ee53fb60695b.nii.gz

BNU_2/sub-0025966/ses-1/mri/mwp2sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/78/MD5E-s2274636--629394d090f43be539a6b9cfd789187c.nii.gz/MD5E-s2274636--629394d090f43be539a6b9cfd789187c.nii.gz

BNU_2/sub-0025966/ses-1/mri/mwp3sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/vx/MD5E-s2508458--022a60952087dcf69ae160f30c8b883f.nii.gz/MD5E-s2508458--022a60952087dcf69ae160f30c8b883f.nii.gz

BNU_2/sub-0025966/ses-1/mri/neuromorphometrics_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025966/ses-1/mri/neuromorphometrics_sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025966/ses-1/mri/p0sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/6Q/MD5E-s864836--f275a8dd94f58c08b49e0d1555bfbc20.nii.gz/MD5E-s864836--f275a8dd94f58c08b49e0d1555bfbc20.nii.gz

BNU_2/sub-0025966/ses-1/mri/p1sub-0025966_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025966/ses-1/mri/p2sub-0025966_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025966/ses-1/mri/p3sub-0025966_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025966/ses-1/mri/rp1sub-0025966_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025966/ses-1/mri/rp2sub-0025966_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025966/ses-1/mri/rp3sub-0025966_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025966/ses-1/mri/t_sub-0025966_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/vv/MD5E-s284--2e1bb9dcac469ed843e84469c9b15dc7.mat/MD5E-s284--2e1bb9dcac469ed843e84469c9b15dc7.mat

BNU_2/sub-0025966/ses-1/mri/t_sub-0025966_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025966/ses-1/mri/thalamus_sub-0025966_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025966/ses-1/mri/thalamus_sub-0025966_ses-1_run-1_T1w.nii.gz

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