[DATALAD RUNCMD] Compute LMU_3/sub-0025424/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025424/ses-2/anat/sub-0025424_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025424/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025424/ses-2/label/catROI_sub-0025424_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/72/MD5E-s61418--4420509a39f66adf89aa2348c6b96765.mat/MD5E-s61418--4420509a39f66adf89aa2348c6b96765.mat

LMU_3/sub-0025424/ses-2/label/catROI_sub-0025424_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/J6/MD5E-s189314--2d1d7a2eb5a9e46e26f0bf5334b56af6.xml/MD5E-s189314--2d1d7a2eb5a9e46e26f0bf5334b56af6.xml

LMU_3/sub-0025424/ses-2/label/catROIs_sub-0025424_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XP/42/MD5E-s120125--68aa20cdaebfc09beb41c9e754473746.mat/MD5E-s120125--68aa20cdaebfc09beb41c9e754473746.mat

LMU_3/sub-0025424/ses-2/label/catROIs_sub-0025424_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/wq/MD5E-s332048--b5827285f9b0a6d88136caff81d9a0a7.xml/MD5E-s332048--b5827285f9b0a6d88136caff81d9a0a7.xml

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/Qm/MD5E-s159628--147f17d37ae6b2db7f26ce6fb21902ed.nii.gz/MD5E-s159628--147f17d37ae6b2db7f26ce6fb21902ed.nii.gz

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KZ/4Q/MD5E-s177848--ab5b8aea20ce596656be5db1fe392054.nii.gz/MD5E-s177848--ab5b8aea20ce596656be5db1fe392054.nii.gz

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/f0/MD5E-s240462--ae61217a58b24cb44927591e9556df9c.nii.gz/MD5E-s240462--ae61217a58b24cb44927591e9556df9c.nii.gz

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025424/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/xx/MD5E-s267055--af33b43c5a99d1d4e968828214507c69.nii.gz/MD5E-s267055--af33b43c5a99d1d4e968828214507c69.nii.gz

LMU_3/sub-0025424/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025424/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jv/Gk/MD5E-s23209--d8728e6889c265b6d839ef1d1b701392.nii.gz/MD5E-s23209--d8728e6889c265b6d839ef1d1b701392.nii.gz

LMU_3/sub-0025424/ses-2/mri/aal3_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025424/ses-2/mri/aal3_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/8q/MD5E-s182834--5aaeb9fdcfb2c5a6b8e1a05005d6d4f9.nii.gz/MD5E-s182834--5aaeb9fdcfb2c5a6b8e1a05005d6d4f9.nii.gz

LMU_3/sub-0025424/ses-2/mri/anatomy3_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025424/ses-2/mri/anatomy3_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/Xj/MD5E-s128873--3a5fa365e93ba83c9922c83e185df090.nii.gz/MD5E-s128873--3a5fa365e93ba83c9922c83e185df090.nii.gz

LMU_3/sub-0025424/ses-2/mri/anon_misub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/v4/MD5E-s10399952--99ee4b835ce506a828f2e7a7016fefe4.nii.gz/MD5E-s10399952--99ee4b835ce506a828f2e7a7016fefe4.nii.gz

LMU_3/sub-0025424/ses-2/mri/anon_msub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X6/6X/MD5E-s10708253--2355a23aeceadd17cbc91053a4109605.nii.gz/MD5E-s10708253--2355a23aeceadd17cbc91053a4109605.nii.gz

LMU_3/sub-0025424/ses-2/mri/cat_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/Qp/MD5E-s107739--3e6a4eb73740f8137a754d14685b540f.nii.gz/MD5E-s107739--3e6a4eb73740f8137a754d14685b540f.nii.gz

LMU_3/sub-0025424/ses-2/mri/cobra_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025424/ses-2/mri/cobra_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/1K/MD5E-s44944--dc810e38e9100fcd9d4e06479d33d12e.nii.gz/MD5E-s44944--dc810e38e9100fcd9d4e06479d33d12e.nii.gz

LMU_3/sub-0025424/ses-2/mri/hammers_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025424/ses-2/mri/hammers_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/qp/MD5E-s143521--d4ef06d76c5127c2b6ed5270fcaf12cc.nii.gz/MD5E-s143521--d4ef06d76c5127c2b6ed5270fcaf12cc.nii.gz

LMU_3/sub-0025424/ses-2/mri/ibsr_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025424/ses-2/mri/ibsr_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/gV/MD5E-s151037--1cbd00ee219df28c0525e1a0d4a95eb8.nii.gz/MD5E-s151037--1cbd00ee219df28c0525e1a0d4a95eb8.nii.gz

LMU_3/sub-0025424/ses-2/mri/it_sub-0025424_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/w8/MD5E-s282--3127656767b29f0faa7b851944906303.mat/MD5E-s282--3127656767b29f0faa7b851944906303.mat

LMU_3/sub-0025424/ses-2/mri/it_sub-0025424_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/82/MD5E-s283--99348ce38cfdb32e9706308a9cda1c36.mat/MD5E-s283--99348ce38cfdb32e9706308a9cda1c36.mat

LMU_3/sub-0025424/ses-2/mri/iy_sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/kp/MD5E-s44574728--fba69deeb5d82888d8e6d61c8182ecd6.nii.gz/MD5E-s44574728--fba69deeb5d82888d8e6d61c8182ecd6.nii.gz

LMU_3/sub-0025424/ses-2/mri/julichbrain_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025424/ses-2/mri/julichbrain_sub-0025424_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/M1/48/MD5E-s191816--843db229336428ab5864dd74ae546ef4.nii.gz/MD5E-s191816--843db229336428ab5864dd74ae546ef4.nii.gz

LMU_3/sub-0025424/ses-2/mri/lpba40_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025424/ses-2/mri/lpba40_sub-0025424_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025424/ses-2/mri/m0wp1sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/gV/MD5E-s2603180--54ad410d88dca57eae7b078cc24f7a7c.nii.gz/MD5E-s2603180--54ad410d88dca57eae7b078cc24f7a7c.nii.gz

LMU_3/sub-0025424/ses-2/mri/m0wp2sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/Qp/MD5E-s2326847--0489b2627182e76583dd0c7412fd134b.nii.gz/MD5E-s2326847--0489b2627182e76583dd0c7412fd134b.nii.gz

LMU_3/sub-0025424/ses-2/mri/m0wp3sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/36/FJ/MD5E-s2752283--95c4a6ea40a7e0029da38078166b1dd4.nii.gz/MD5E-s2752283--95c4a6ea40a7e0029da38078166b1dd4.nii.gz

LMU_3/sub-0025424/ses-2/mri/mori_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025424/ses-2/mri/mori_sub-0025424_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/p9/J2/MD5E-s168996--b2b53a7f8f9cb8479dac658b0b08c795.nii.gz/MD5E-s168996--b2b53a7f8f9cb8479dac658b0b08c795.nii.gz

LMU_3/sub-0025424/ses-2/mri/mwp1sub-0025424_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025424/ses-2/mri/mwp2sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_3/sub-0025424/ses-2/mri/mwp3sub-0025424_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025424/ses-2/mri/neuromorphometrics_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_3/sub-0025424/ses-2/mri/neuromorphometrics_sub-0025424_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025424/ses-2/mri/p0sub-0025424_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/zz/MD5E-s655803--f40aae9093324910816f4cef270592f2.nii.gz/MD5E-s655803--f40aae9093324910816f4cef270592f2.nii.gz

LMU_3/sub-0025424/ses-2/mri/p1sub-0025424_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025424/ses-2/mri/p2sub-0025424_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025424/ses-2/mri/p3sub-0025424_ses-2_run-1_T1w.nii.gz

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LMU_3/sub-0025424/ses-2/mri/rp1sub-0025424_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025424/ses-2/mri/rp2sub-0025424_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025424/ses-2/mri/rp3sub-0025424_ses-2_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025424/ses-2/mri/t_sub-0025424_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/ZX/MD5E-s283--79d4ab5a4f8d477283127415a04b07b1.mat/MD5E-s283--79d4ab5a4f8d477283127415a04b07b1.mat

LMU_3/sub-0025424/ses-2/mri/t_sub-0025424_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_3/sub-0025424/ses-2/mri/thalamus_sub-0025424_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025424/ses-2/mri/thalamus_sub-0025424_ses-2_run-1_T1w.nii.gz

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