[DATALAD RUNCMD] Compute BNU_2/sub-0025951/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025951/ses-1/anat/sub-0025951_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025951/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025951/ses-1/label/catROI_sub-0025951_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/0X/MD5E-s61218--29e6ce8680829888fdb14058d4eb31c7.mat/MD5E-s61218--29e6ce8680829888fdb14058d4eb31c7.mat

BNU_2/sub-0025951/ses-1/label/catROI_sub-0025951_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/qM/MD5E-s188904--264a1e4ef2b531903bdf069d70c2ed81.xml/MD5E-s188904--264a1e4ef2b531903bdf069d70c2ed81.xml

BNU_2/sub-0025951/ses-1/label/catROIs_sub-0025951_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/0k/MD5E-s120056--f16f7a746a178cf7512d036ce073b03f.mat/MD5E-s120056--f16f7a746a178cf7512d036ce073b03f.mat

BNU_2/sub-0025951/ses-1/label/catROIs_sub-0025951_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/j7/MD5E-s332110--38c806923c05d4af6894f19b8aa44b4f.xml/MD5E-s332110--38c806923c05d4af6894f19b8aa44b4f.xml

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/7F/MD5E-s141427--85fa0b65a2abad6ddb3f2e861bcc2d0b.nii.gz/MD5E-s141427--85fa0b65a2abad6ddb3f2e861bcc2d0b.nii.gz

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/6M/MD5E-s157391--bab066fb8f410334b9907d56d9172c4d.nii.gz/MD5E-s157391--bab066fb8f410334b9907d56d9172c4d.nii.gz

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/Gv/MD5E-s210936--eff6ef74f060a5df5ebe31e24becf7a3.nii.gz/MD5E-s210936--eff6ef74f060a5df5ebe31e24becf7a3.nii.gz

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025951/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/FF/MD5E-s233290--e6f9998765626eff4e861c3b072a578c.nii.gz/MD5E-s233290--e6f9998765626eff4e861c3b072a578c.nii.gz

BNU_2/sub-0025951/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025951/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/3k/MD5E-s18864--835724219e6243f59c2a357a3923d499.nii.gz/MD5E-s18864--835724219e6243f59c2a357a3923d499.nii.gz

BNU_2/sub-0025951/ses-1/mri/aal3_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025951/ses-1/mri/aal3_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pg/jx/MD5E-s158271--9862cfdb0135b566d48001fca6e11fa2.nii.gz/MD5E-s158271--9862cfdb0135b566d48001fca6e11fa2.nii.gz

BNU_2/sub-0025951/ses-1/mri/anatomy3_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025951/ses-1/mri/anatomy3_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/zk/MD5E-s112876--f70b48e2784416b4568b24da6e8f9944.nii.gz/MD5E-s112876--f70b48e2784416b4568b24da6e8f9944.nii.gz

BNU_2/sub-0025951/ses-1/mri/anon_misub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/26/MD5E-s3604894--f5a441a831d0d5c1878949a8770baaef.nii.gz/MD5E-s3604894--f5a441a831d0d5c1878949a8770baaef.nii.gz

BNU_2/sub-0025951/ses-1/mri/anon_msub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/XW/MD5E-s9534307--39444e82450fb287f72a3c4536182613.nii.gz/MD5E-s9534307--39444e82450fb287f72a3c4536182613.nii.gz

BNU_2/sub-0025951/ses-1/mri/cat_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xk/kM/MD5E-s83603--1397097872282ac2a615cf96d266f7d9.nii.gz/MD5E-s83603--1397097872282ac2a615cf96d266f7d9.nii.gz

BNU_2/sub-0025951/ses-1/mri/cobra_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025951/ses-1/mri/cobra_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Z/91/MD5E-s40149--150957f1b3f1df45196b9ba37d45d02c.nii.gz/MD5E-s40149--150957f1b3f1df45196b9ba37d45d02c.nii.gz

BNU_2/sub-0025951/ses-1/mri/hammers_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025951/ses-1/mri/hammers_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/FZ/MD5E-s125103--c0854f11d460066b175ac49d8d74a946.nii.gz/MD5E-s125103--c0854f11d460066b175ac49d8d74a946.nii.gz

BNU_2/sub-0025951/ses-1/mri/ibsr_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025951/ses-1/mri/ibsr_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zv/zj/MD5E-s131030--f5f454e015788a6c0e2b060d07b8b6e9.nii.gz/MD5E-s131030--f5f454e015788a6c0e2b060d07b8b6e9.nii.gz

BNU_2/sub-0025951/ses-1/mri/it_sub-0025951_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g3/V6/MD5E-s283--9a5ff190a279248aa8ebe9f54965109e.mat/MD5E-s283--9a5ff190a279248aa8ebe9f54965109e.mat

BNU_2/sub-0025951/ses-1/mri/it_sub-0025951_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/Wz/MD5E-s284--d8b0b51b8d1c34c5fb89a266f34b38d3.mat/MD5E-s284--d8b0b51b8d1c34c5fb89a266f34b38d3.mat

BNU_2/sub-0025951/ses-1/mri/iy_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/Gx/MD5E-s32874886--a229a2e3c2f86a45d47bd7ce38fa11f6.nii.gz/MD5E-s32874886--a229a2e3c2f86a45d47bd7ce38fa11f6.nii.gz

BNU_2/sub-0025951/ses-1/mri/julichbrain_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025951/ses-1/mri/julichbrain_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/gZ/MD5E-s167929--79da64e188bb3527a292227887a86fd7.nii.gz/MD5E-s167929--79da64e188bb3527a292227887a86fd7.nii.gz

BNU_2/sub-0025951/ses-1/mri/lpba40_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025951/ses-1/mri/lpba40_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/1Z/MD5E-s122742--de0c7e87a0bc91355cc8b7a23b5a10a3.nii.gz/MD5E-s122742--de0c7e87a0bc91355cc8b7a23b5a10a3.nii.gz

BNU_2/sub-0025951/ses-1/mri/m0wp1sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/10/XZ/MD5E-s2586469--5f53c54c3fa99d766c5670dcd9410cd3.nii.gz/MD5E-s2586469--5f53c54c3fa99d766c5670dcd9410cd3.nii.gz

BNU_2/sub-0025951/ses-1/mri/m0wp2sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/9g/MD5E-s2264505--e31122aa04df975f3c2e196ee537a67f.nii.gz/MD5E-s2264505--e31122aa04df975f3c2e196ee537a67f.nii.gz

BNU_2/sub-0025951/ses-1/mri/m0wp3sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/Jg/MD5E-s2492606--2ec2088d89774cd961f5eb428e36750f.nii.gz/MD5E-s2492606--2ec2088d89774cd961f5eb428e36750f.nii.gz

BNU_2/sub-0025951/ses-1/mri/mori_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025951/ses-1/mri/mori_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/z8/MD5E-s145450--f94110823cfcfa2cae1e8c6061e128b5.nii.gz/MD5E-s145450--f94110823cfcfa2cae1e8c6061e128b5.nii.gz

BNU_2/sub-0025951/ses-1/mri/mwp1sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/5J/MD5E-s2591931--3f3350f12306fa80a7c7f0e17688786c.nii.gz/MD5E-s2591931--3f3350f12306fa80a7c7f0e17688786c.nii.gz

BNU_2/sub-0025951/ses-1/mri/mwp2sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/W2/MD5E-s2267716--cd7c17c4c3adcccacddd3def49cc003f.nii.gz/MD5E-s2267716--cd7c17c4c3adcccacddd3def49cc003f.nii.gz

BNU_2/sub-0025951/ses-1/mri/mwp3sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025951/ses-1/mri/neuromorphometrics_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025951/ses-1/mri/neuromorphometrics_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025951/ses-1/mri/p0sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/QK/MD5E-s714542--5423aa341c371bad607d101b0af2420c.nii.gz/MD5E-s714542--5423aa341c371bad607d101b0af2420c.nii.gz

BNU_2/sub-0025951/ses-1/mri/p1sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025951/ses-1/mri/p2sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/wm/MD5E-s490683--c30ba097cf44e691215d2306688afc5e.nii.gz/MD5E-s490683--c30ba097cf44e691215d2306688afc5e.nii.gz

BNU_2/sub-0025951/ses-1/mri/p3sub-0025951_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025951/ses-1/mri/rp1sub-0025951_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025951/ses-1/mri/rp2sub-0025951_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025951/ses-1/mri/rp3sub-0025951_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025951/ses-1/mri/t_sub-0025951_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025951/ses-1/mri/t_sub-0025951_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/90/MD5E-s282--c7f7aed43039d3a66e53e1933623b4ea.mat/MD5E-s282--c7f7aed43039d3a66e53e1933623b4ea.mat

BNU_2/sub-0025951/ses-1/mri/thalamus_sub-0025951_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025951/ses-1/mri/thalamus_sub-0025951_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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