[DATALAD RUNCMD] Compute IPCAS_3/sub-0025556/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_3/sub-0025556/ses-1/anat/sub-0025556_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_3/sub-0025556/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_3/sub-0025556/ses-1/label/catROI_sub-0025556_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/FQ/MD5E-s57832--f98ddcaf1b72a3a84482239564bf7dc6.mat/MD5E-s57832--f98ddcaf1b72a3a84482239564bf7dc6.mat

IPCAS_3/sub-0025556/ses-1/label/catROI_sub-0025556_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/8Q/MD5E-s188729--08a12b959c4c2aa4fc0b5139fd446369.xml/MD5E-s188729--08a12b959c4c2aa4fc0b5139fd446369.xml

IPCAS_3/sub-0025556/ses-1/label/catROIs_sub-0025556_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/45/MD5E-s120160--1fe9371ac87f3eaaef70f5b35a2967ec.mat/MD5E-s120160--1fe9371ac87f3eaaef70f5b35a2967ec.mat

IPCAS_3/sub-0025556/ses-1/label/catROIs_sub-0025556_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/X3/MD5E-s332130--49d94dfbee1eba060ccd18fc8e6c07dc.xml/MD5E-s332130--49d94dfbee1eba060ccd18fc8e6c07dc.xml

IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_3/sub-0025556/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/aal3_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/aal3_sub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/anatomy3_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/anatomy3_sub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/8v/MD5E-s118932--52e7a5011f31b5abb8051d14a8f8fddc.nii.gz/MD5E-s118932--52e7a5011f31b5abb8051d14a8f8fddc.nii.gz

IPCAS_3/sub-0025556/ses-1/mri/anon_misub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/anon_msub-0025556_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/cat_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/cobra_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_3/sub-0025556/ses-1/mri/cobra_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/hammers_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_3/sub-0025556/ses-1/mri/hammers_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/ibsr_sub-0025556_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_3/sub-0025556/ses-1/mri/ibsr_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/it_sub-0025556_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_3/sub-0025556/ses-1/mri/it_sub-0025556_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_3/sub-0025556/ses-1/mri/iy_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/julichbrain_sub-0025556_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025556/ses-1/mri/julichbrain_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/lpba40_sub-0025556_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025556/ses-1/mri/lpba40_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/m0wp1sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/m0wp2sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/m0wp3sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/mori_sub-0025556_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025556/ses-1/mri/mori_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/mwp1sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/mwp2sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/mwp3sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/neuromorphometrics_sub-0025556_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025556/ses-1/mri/neuromorphometrics_sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/p0sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/p1sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/p2sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/p3sub-0025556_ses-1_run-1_T1w.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/rp1sub-0025556_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/rp3sub-0025556_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_3/sub-0025556/ses-1/mri/t_sub-0025556_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_3/sub-0025556/ses-1/mri/t_sub-0025556_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_3/sub-0025556/ses-1/mri/thalamus_sub-0025556_ses-1_run-1_T1w.csv

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IPCAS_3/sub-0025556/ses-1/mri/thalamus_sub-0025556_ses-1_run-1_T1w.nii.gz

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