[DATALAD RUNCMD] Compute JHNU/sub-0025600/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/JHNU/sub-0025600/ses-1/anat/sub-0025600_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "JHNU/sub-0025600/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

JHNU/sub-0025600/ses-1/label/catROI_sub-0025600_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/14/MD5E-s57896--6fe137f12ab8d06488830ddfb1ddc0a6.mat/MD5E-s57896--6fe137f12ab8d06488830ddfb1ddc0a6.mat

JHNU/sub-0025600/ses-1/label/catROI_sub-0025600_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/3p/MD5E-s188727--53bbbeb21b441d9943d9168bd0e49ac0.xml/MD5E-s188727--53bbbeb21b441d9943d9168bd0e49ac0.xml

JHNU/sub-0025600/ses-1/label/catROIs_sub-0025600_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/JP/MD5E-s120066--12c9fc7de9d44eb8bbf1b5e4f067e594.mat/MD5E-s120066--12c9fc7de9d44eb8bbf1b5e4f067e594.mat

JHNU/sub-0025600/ses-1/label/catROIs_sub-0025600_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/Qz/MD5E-s332122--c704fb4eac4f15d99f8e3f6b10ed5be7.xml/MD5E-s332122--c704fb4eac4f15d99f8e3f6b10ed5be7.xml

JHNU/sub-0025600/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

JHNU/sub-0025600/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/Z8/MD5E-s190598--01e0f3adca840a892ad93a7f2319dd6a.nii.gz/MD5E-s190598--01e0f3adca840a892ad93a7f2319dd6a.nii.gz

JHNU/sub-0025600/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

JHNU/sub-0025600/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9X/z9/MD5E-s213144--b660f6b05f44e3707e38065ba7560de8.nii.gz/MD5E-s213144--b660f6b05f44e3707e38065ba7560de8.nii.gz

JHNU/sub-0025600/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

JHNU/sub-0025600/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XK/x5/MD5E-s269050--313dc8db0fd5959cc5be6c23b18db8ca.nii.gz/MD5E-s269050--313dc8db0fd5959cc5be6c23b18db8ca.nii.gz

JHNU/sub-0025600/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

JHNU/sub-0025600/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/K4/MD5E-s298770--0b9c00a44703441f032f8707f69ff3f3.nii.gz/MD5E-s298770--0b9c00a44703441f032f8707f69ff3f3.nii.gz

JHNU/sub-0025600/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

JHNU/sub-0025600/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pM/xQ/MD5E-s26627--2789d239ea0eb12537ee90cab8758f9f.nii.gz/MD5E-s26627--2789d239ea0eb12537ee90cab8758f9f.nii.gz

JHNU/sub-0025600/ses-1/mri/aal3_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

JHNU/sub-0025600/ses-1/mri/aal3_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/FZ/MD5E-s215943--58a6f1059bd56ff9cfb8f65d7ccc9ca7.nii.gz/MD5E-s215943--58a6f1059bd56ff9cfb8f65d7ccc9ca7.nii.gz

JHNU/sub-0025600/ses-1/mri/anatomy3_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

JHNU/sub-0025600/ses-1/mri/anatomy3_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Q/G8/MD5E-s152618--74873483bc47b9a9f5491d87d8b9a31b.nii.gz/MD5E-s152618--74873483bc47b9a9f5491d87d8b9a31b.nii.gz

JHNU/sub-0025600/ses-1/mri/anon_misub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/7K/MD5E-s5258760--309716868364b341a7709fd74041b01f.nii.gz/MD5E-s5258760--309716868364b341a7709fd74041b01f.nii.gz

JHNU/sub-0025600/ses-1/mri/anon_msub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/vk/MD5E-s11377882--83efdcb2d78a793d350a15691862cc46.nii.gz/MD5E-s11377882--83efdcb2d78a793d350a15691862cc46.nii.gz

JHNU/sub-0025600/ses-1/mri/cat_sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/cobra_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

JHNU/sub-0025600/ses-1/mri/cobra_sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/hammers_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

JHNU/sub-0025600/ses-1/mri/hammers_sub-0025600_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/17/2p/MD5E-s166722--c653e754e95429a078e44eccea7c6bbf.nii.gz/MD5E-s166722--c653e754e95429a078e44eccea7c6bbf.nii.gz

JHNU/sub-0025600/ses-1/mri/ibsr_sub-0025600_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

JHNU/sub-0025600/ses-1/mri/ibsr_sub-0025600_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/Zv/MD5E-s173501--8f7a8647f049a971459d89a48d4b4b13.nii.gz/MD5E-s173501--8f7a8647f049a971459d89a48d4b4b13.nii.gz

JHNU/sub-0025600/ses-1/mri/it_sub-0025600_ses-1_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/1J/m3/MD5E-s282--a400d8342d24c445790b8952b425a9e5.mat/MD5E-s282--a400d8342d24c445790b8952b425a9e5.mat

JHNU/sub-0025600/ses-1/mri/it_sub-0025600_ses-1_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/8F/3z/MD5E-s282--23f894a21fc7188383403a220610c8d7.mat/MD5E-s282--23f894a21fc7188383403a220610c8d7.mat

JHNU/sub-0025600/ses-1/mri/iy_sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/julichbrain_sub-0025600_ses-1_run-1_T1w.csv

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JHNU/sub-0025600/ses-1/mri/julichbrain_sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/lpba40_sub-0025600_ses-1_run-1_T1w.csv

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JHNU/sub-0025600/ses-1/mri/lpba40_sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/m0wp1sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/m0wp2sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/m0wp3sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/mori_sub-0025600_ses-1_run-1_T1w.csv

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JHNU/sub-0025600/ses-1/mri/mori_sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/mwp1sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/mwp2sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/mwp3sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/neuromorphometrics_sub-0025600_ses-1_run-1_T1w.csv

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JHNU/sub-0025600/ses-1/mri/neuromorphometrics_sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/p0sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/p1sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/p2sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/p3sub-0025600_ses-1_run-1_T1w.nii.gz

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JHNU/sub-0025600/ses-1/mri/rp1sub-0025600_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025600/ses-1/mri/rp2sub-0025600_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025600/ses-1/mri/rp3sub-0025600_ses-1_run-1_T1w_affine.nii.gz

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JHNU/sub-0025600/ses-1/mri/t_sub-0025600_ses-1_run-1_T1w_affine_reorient.mat

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JHNU/sub-0025600/ses-1/mri/t_sub-0025600_ses-1_run-1_T1w_rigid_reorient.mat

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JHNU/sub-0025600/ses-1/mri/thalamus_sub-0025600_ses-1_run-1_T1w.csv

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JHNU/sub-0025600/ses-1/mri/thalamus_sub-0025600_ses-1_run-1_T1w.nii.gz

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