[DATALAD RUNCMD] Compute LMU_3/sub-0025413/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_3/sub-0025413/ses-1/anat/sub-0025413_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_3/sub-0025413/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_3/sub-0025413/ses-1/label/catROI_sub-0025413_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/3x/MD5E-s61349--a78ef9c48f151fad405998717e2a4e1a.mat/MD5E-s61349--a78ef9c48f151fad405998717e2a4e1a.mat

LMU_3/sub-0025413/ses-1/label/catROI_sub-0025413_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/3F/MD5E-s189515--4335134274463454a4759d8a6876a9f8.xml/MD5E-s189515--4335134274463454a4759d8a6876a9f8.xml

LMU_3/sub-0025413/ses-1/label/catROIs_sub-0025413_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/j7/MD5E-s120212--b8ff1a9b4153092269717483119dbcd5.mat/MD5E-s120212--b8ff1a9b4153092269717483119dbcd5.mat

LMU_3/sub-0025413/ses-1/label/catROIs_sub-0025413_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/qp/MD5E-s332130--de5ddd3f6c52d4b2ac77bff82f894fb3.xml/MD5E-s332130--de5ddd3f6c52d4b2ac77bff82f894fb3.xml

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/2j/MD5E-s148781--acdf6c710e3466e82a156fdcb139aed7.nii.gz/MD5E-s148781--acdf6c710e3466e82a156fdcb139aed7.nii.gz

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mG/51/MD5E-s167457--e954f235d61a6d0908828355dddbfece.nii.gz/MD5E-s167457--e954f235d61a6d0908828355dddbfece.nii.gz

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/2J/MD5E-s224371--9af79c31b4582959f8283970d4c94f9a.nii.gz/MD5E-s224371--9af79c31b4582959f8283970d4c94f9a.nii.gz

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_3/sub-0025413/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/02/MD5E-s250869--11c91cf3074acdfef00eeaf6ff6abe87.nii.gz/MD5E-s250869--11c91cf3074acdfef00eeaf6ff6abe87.nii.gz

LMU_3/sub-0025413/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_3/sub-0025413/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J0/Wx/MD5E-s22467--b1974684421b682b695bf49d2b0e6420.nii.gz/MD5E-s22467--b1974684421b682b695bf49d2b0e6420.nii.gz

LMU_3/sub-0025413/ses-1/mri/aal3_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_3/sub-0025413/ses-1/mri/aal3_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/V1/MD5E-s169892--489acacedfa94a049d1e8526554e5982.nii.gz/MD5E-s169892--489acacedfa94a049d1e8526554e5982.nii.gz

LMU_3/sub-0025413/ses-1/mri/anatomy3_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_3/sub-0025413/ses-1/mri/anatomy3_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/k9/MD5E-s121407--0c1cf509dee0b404033ca45b2c3558d8.nii.gz/MD5E-s121407--0c1cf509dee0b404033ca45b2c3558d8.nii.gz

LMU_3/sub-0025413/ses-1/mri/anon_misub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/5z/MD5E-s8364159--ce571967bb73acd3283d06ec261fe301.nii.gz/MD5E-s8364159--ce571967bb73acd3283d06ec261fe301.nii.gz

LMU_3/sub-0025413/ses-1/mri/anon_msub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qZ/x9/MD5E-s9002512--90f345be57ea61e6a375c9157c35ef60.nii.gz/MD5E-s9002512--90f345be57ea61e6a375c9157c35ef60.nii.gz

LMU_3/sub-0025413/ses-1/mri/cat_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/vw/MD5E-s103020--58207641dec9d591ede29ccf84433681.nii.gz/MD5E-s103020--58207641dec9d591ede29ccf84433681.nii.gz

LMU_3/sub-0025413/ses-1/mri/cobra_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_3/sub-0025413/ses-1/mri/cobra_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/kJ/MD5E-s42342--fe1d6bdf81e47d3b5fdee4eb541be1d8.nii.gz/MD5E-s42342--fe1d6bdf81e47d3b5fdee4eb541be1d8.nii.gz

LMU_3/sub-0025413/ses-1/mri/hammers_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_3/sub-0025413/ses-1/mri/hammers_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/xP/MD5E-s133843--ccf08c9b0d87da4249c7fd1f046fa2b0.nii.gz/MD5E-s133843--ccf08c9b0d87da4249c7fd1f046fa2b0.nii.gz

LMU_3/sub-0025413/ses-1/mri/ibsr_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_3/sub-0025413/ses-1/mri/ibsr_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/mG/MD5E-s141689--030c9e128ce0c1c39ba15ea682a267d4.nii.gz/MD5E-s141689--030c9e128ce0c1c39ba15ea682a267d4.nii.gz

LMU_3/sub-0025413/ses-1/mri/it_sub-0025413_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/6K/MD5E-s284--ab858912e9d0891c8026b56134f84f58.mat/MD5E-s284--ab858912e9d0891c8026b56134f84f58.mat

LMU_3/sub-0025413/ses-1/mri/it_sub-0025413_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/kG/MD5E-s284--4b7cf3ad246087d4167b4341fff770dc.mat/MD5E-s284--4b7cf3ad246087d4167b4341fff770dc.mat

LMU_3/sub-0025413/ses-1/mri/iy_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/PW/MD5E-s41061082--3a31e0a1f7b1e32aab97eaf81fce9f9b.nii.gz/MD5E-s41061082--3a31e0a1f7b1e32aab97eaf81fce9f9b.nii.gz

LMU_3/sub-0025413/ses-1/mri/julichbrain_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_3/sub-0025413/ses-1/mri/julichbrain_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/v9/MD5E-s179429--ec3d1b783925c6c35806ee49c843bd65.nii.gz/MD5E-s179429--ec3d1b783925c6c35806ee49c843bd65.nii.gz

LMU_3/sub-0025413/ses-1/mri/lpba40_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_3/sub-0025413/ses-1/mri/lpba40_sub-0025413_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/WX/WV/MD5E-s132423--758ca52f076dc65bbca5c57a50929393.nii.gz/MD5E-s132423--758ca52f076dc65bbca5c57a50929393.nii.gz

LMU_3/sub-0025413/ses-1/mri/m0wp1sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/37/MD5E-s2627756--03461af395bf78dbe7f4c4c76063eb49.nii.gz/MD5E-s2627756--03461af395bf78dbe7f4c4c76063eb49.nii.gz

LMU_3/sub-0025413/ses-1/mri/m0wp2sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/4j/MD5E-s2341814--467d2f212e8a9dc889b40b9b9310cb20.nii.gz/MD5E-s2341814--467d2f212e8a9dc889b40b9b9310cb20.nii.gz

LMU_3/sub-0025413/ses-1/mri/m0wp3sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/6Q/MD5E-s2704425--7117f84d9c169c36fb6b02a94e071d0b.nii.gz/MD5E-s2704425--7117f84d9c169c36fb6b02a94e071d0b.nii.gz

LMU_3/sub-0025413/ses-1/mri/mori_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_3/sub-0025413/ses-1/mri/mori_sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/7j/MD5E-s156917--ad10170d28df0dfbde9b09e176d344c3.nii.gz/MD5E-s156917--ad10170d28df0dfbde9b09e176d344c3.nii.gz

LMU_3/sub-0025413/ses-1/mri/mwp1sub-0025413_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025413/ses-1/mri/mwp2sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/Zx/MD5E-s2351930--e724ec3c4c16654946d9144db649654c.nii.gz/MD5E-s2351930--e724ec3c4c16654946d9144db649654c.nii.gz

LMU_3/sub-0025413/ses-1/mri/mwp3sub-0025413_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025413/ses-1/mri/neuromorphometrics_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025413/ses-1/mri/neuromorphometrics_sub-0025413_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025413/ses-1/mri/p0sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/Kw/MD5E-s601212--24e599a389db07bb020d5ec4f223fe5a.nii.gz/MD5E-s601212--24e599a389db07bb020d5ec4f223fe5a.nii.gz

LMU_3/sub-0025413/ses-1/mri/p1sub-0025413_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/G4/zp/MD5E-s631953--a03bb0e184991a2fdb2cd8dd0a3a5a84.nii.gz/MD5E-s631953--a03bb0e184991a2fdb2cd8dd0a3a5a84.nii.gz

LMU_3/sub-0025413/ses-1/mri/p2sub-0025413_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/1q/MD5E-s408748--1c5ab5368b9f51c24840765906df6da0.nii.gz/MD5E-s408748--1c5ab5368b9f51c24840765906df6da0.nii.gz

LMU_3/sub-0025413/ses-1/mri/p3sub-0025413_ses-1_run-1_T1w.nii.gz

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LMU_3/sub-0025413/ses-1/mri/rp1sub-0025413_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025413/ses-1/mri/rp2sub-0025413_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025413/ses-1/mri/rp3sub-0025413_ses-1_run-1_T1w_affine.nii.gz

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LMU_3/sub-0025413/ses-1/mri/t_sub-0025413_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/89/MD5E-s284--e6b312a1994d7c81161426f4c1454162.mat/MD5E-s284--e6b312a1994d7c81161426f4c1454162.mat

LMU_3/sub-0025413/ses-1/mri/t_sub-0025413_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/p5/MD5E-s283--87265d9250c42d71c4f5fe30e8449a6f.mat/MD5E-s283--87265d9250c42d71c4f5fe30e8449a6f.mat

LMU_3/sub-0025413/ses-1/mri/thalamus_sub-0025413_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_3/sub-0025413/ses-1/mri/thalamus_sub-0025413_ses-1_run-1_T1w.nii.gz

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