[DATALAD RUNCMD] Compute IACAS/sub-0025475/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025475/ses-1/anat/sub-0025475_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025475/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025475/ses-1/label/catROI_sub-0025475_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/x9/MD5E-s57896--2c163c41b53ee00ee830e65334924afc.mat/MD5E-s57896--2c163c41b53ee00ee830e65334924afc.mat

IACAS/sub-0025475/ses-1/label/catROI_sub-0025475_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/37/MD5E-s189079--6a95e4fc5215fc250e577fa3a3443c64.xml/MD5E-s189079--6a95e4fc5215fc250e577fa3a3443c64.xml

IACAS/sub-0025475/ses-1/label/catROIs_sub-0025475_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/qQ/MD5E-s120295--8f3957b7f4578ba129e7a5325c9e1611.mat/MD5E-s120295--8f3957b7f4578ba129e7a5325c9e1611.mat

IACAS/sub-0025475/ses-1/label/catROIs_sub-0025475_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/vF/MD5E-s332062--a7145de8e787ddc7219c41439d61d406.xml/MD5E-s332062--a7145de8e787ddc7219c41439d61d406.xml

IACAS/sub-0025475/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025475/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/KZ/MD5E-s157051--1a25f353dce47dc4a98665a71932aa2c.nii.gz/MD5E-s157051--1a25f353dce47dc4a98665a71932aa2c.nii.gz

IACAS/sub-0025475/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025475/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Q/kz/MD5E-s174385--b24222e5cbc21c33b900cba3b1c5540f.nii.gz/MD5E-s174385--b24222e5cbc21c33b900cba3b1c5540f.nii.gz

IACAS/sub-0025475/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025475/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/8j/MD5E-s236360--d8d43711d7fc1c66a2662463eb716e59.nii.gz/MD5E-s236360--d8d43711d7fc1c66a2662463eb716e59.nii.gz

IACAS/sub-0025475/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025475/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/KX/MD5E-s261802--398d5f7927d64ab065aaf2964644b553.nii.gz/MD5E-s261802--398d5f7927d64ab065aaf2964644b553.nii.gz

IACAS/sub-0025475/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025475/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f9/px/MD5E-s25140--54693d840a6cd86d5ca2466b906075f8.nii.gz/MD5E-s25140--54693d840a6cd86d5ca2466b906075f8.nii.gz

IACAS/sub-0025475/ses-1/mri/aal3_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025475/ses-1/mri/aal3_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/F5/MD5E-s176984--7ea3478901263f181098e90d66181abd.nii.gz/MD5E-s176984--7ea3478901263f181098e90d66181abd.nii.gz

IACAS/sub-0025475/ses-1/mri/anatomy3_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025475/ses-1/mri/anatomy3_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/5W/MD5E-s128892--dbb53fbcc6cf292732cce9c83f0185ba.nii.gz/MD5E-s128892--dbb53fbcc6cf292732cce9c83f0185ba.nii.gz

IACAS/sub-0025475/ses-1/mri/anon_misub-0025475_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/p6/Q6/MD5E-s8911197--fa8943b585ee7bedd7a89b4201e6eb90.nii.gz/MD5E-s8911197--fa8943b585ee7bedd7a89b4201e6eb90.nii.gz

IACAS/sub-0025475/ses-1/mri/anon_msub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/zJ/MD5E-s10199525--e7ef6db1b2db4c86696fab9a336c6bac.nii.gz/MD5E-s10199525--e7ef6db1b2db4c86696fab9a336c6bac.nii.gz

IACAS/sub-0025475/ses-1/mri/cat_sub-0025475_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/wP/55/MD5E-s96885--62d635014c0b60da36dcc43d515885ec.nii.gz/MD5E-s96885--62d635014c0b60da36dcc43d515885ec.nii.gz

IACAS/sub-0025475/ses-1/mri/cobra_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025475/ses-1/mri/cobra_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/hammers_sub-0025475_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025475/ses-1/mri/hammers_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/ibsr_sub-0025475_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025475/ses-1/mri/ibsr_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/it_sub-0025475_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/7k/MD5E-s283--e99489aba2b3fd0f344b0b478be351a8.mat/MD5E-s283--e99489aba2b3fd0f344b0b478be351a8.mat

IACAS/sub-0025475/ses-1/mri/it_sub-0025475_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/3G/MD5E-s284--61e5668a490fe4df4dfaa4f14cb07d76.mat/MD5E-s284--61e5668a490fe4df4dfaa4f14cb07d76.mat

IACAS/sub-0025475/ses-1/mri/iy_sub-0025475_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/m2/MD5E-s43204127--1e6cb008d175453b76649ee51e3426a7.nii.gz/MD5E-s43204127--1e6cb008d175453b76649ee51e3426a7.nii.gz

IACAS/sub-0025475/ses-1/mri/julichbrain_sub-0025475_ses-1_run-1_T1w.csv

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IACAS/sub-0025475/ses-1/mri/julichbrain_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/lpba40_sub-0025475_ses-1_run-1_T1w.csv

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IACAS/sub-0025475/ses-1/mri/lpba40_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/m0wp1sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/m0wp2sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/m0wp3sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/mori_sub-0025475_ses-1_run-1_T1w.csv

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IACAS/sub-0025475/ses-1/mri/mori_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/mwp1sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/mwp2sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/mwp3sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/neuromorphometrics_sub-0025475_ses-1_run-1_T1w.csv

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IACAS/sub-0025475/ses-1/mri/neuromorphometrics_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/p0sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/p1sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/p2sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/p3sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/rp1sub-0025475_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025475/ses-1/mri/rp2sub-0025475_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025475/ses-1/mri/rp3sub-0025475_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025475/ses-1/mri/t_sub-0025475_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025475/ses-1/mri/t_sub-0025475_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025475/ses-1/mri/thalamus_sub-0025475_ses-1_run-1_T1w.csv

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IACAS/sub-0025475/ses-1/mri/thalamus_sub-0025475_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025475/ses-1/mri/wj_sub-0025475_ses-1_run-1_T1w.nii.gz

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