[DATALAD RUNCMD] Compute IACAS/sub-0025457/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025457/ses-2/anat/sub-0025457_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025457/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025457/ses-2/label/catROI_sub-0025457_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GZ/q5/MD5E-s58200--a45480f2a3cc58f6f521f0bdf382041d.mat/MD5E-s58200--a45480f2a3cc58f6f521f0bdf382041d.mat

IACAS/sub-0025457/ses-2/label/catROI_sub-0025457_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/71/MD5E-s188936--0d734bec2e8705dc9f26bb3246f91868.xml/MD5E-s188936--0d734bec2e8705dc9f26bb3246f91868.xml

IACAS/sub-0025457/ses-2/label/catROIs_sub-0025457_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/3M/MD5E-s120148--0cf2430fe395acebd03799bc0fb51e45.mat/MD5E-s120148--0cf2430fe395acebd03799bc0fb51e45.mat

IACAS/sub-0025457/ses-2/label/catROIs_sub-0025457_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7X/kp/MD5E-s332126--220282ab5d1d5cb7b7a224f4cb729ff4.xml/MD5E-s332126--220282ab5d1d5cb7b7a224f4cb729ff4.xml

IACAS/sub-0025457/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025457/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/2k/MD5E-s169200--874886e8928973b61caef0396be02d6a.nii.gz/MD5E-s169200--874886e8928973b61caef0396be02d6a.nii.gz

IACAS/sub-0025457/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025457/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/Z0/MD5E-s188439--d81029f00cd568a87d7d2a4cda358bde.nii.gz/MD5E-s188439--d81029f00cd568a87d7d2a4cda358bde.nii.gz

IACAS/sub-0025457/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025457/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/vJ/MD5E-s253447--9ec0d8bf55282c72375750b9167ab92c.nii.gz/MD5E-s253447--9ec0d8bf55282c72375750b9167ab92c.nii.gz

IACAS/sub-0025457/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025457/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/38/MD5E-s281808--e5437c11eab5b8c4ca0094339ed47156.nii.gz/MD5E-s281808--e5437c11eab5b8c4ca0094339ed47156.nii.gz

IACAS/sub-0025457/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025457/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/Xk/MD5E-s25422--001b2b6e2d22ddfd1e1f8c95cdca33e9.nii.gz/MD5E-s25422--001b2b6e2d22ddfd1e1f8c95cdca33e9.nii.gz

IACAS/sub-0025457/ses-2/mri/aal3_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025457/ses-2/mri/aal3_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/9z/MD5E-s189399--130f7de75faa979d51c0a1c425a89499.nii.gz/MD5E-s189399--130f7de75faa979d51c0a1c425a89499.nii.gz

IACAS/sub-0025457/ses-2/mri/anatomy3_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025457/ses-2/mri/anatomy3_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/Pw/MD5E-s138428--4bbfad9943ad08bc58e4b6081872f37b.nii.gz/MD5E-s138428--4bbfad9943ad08bc58e4b6081872f37b.nii.gz

IACAS/sub-0025457/ses-2/mri/anon_misub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/W8/MD5E-s7735058--4458102e858db2150ea68f4efbdc62eb.nii.gz/MD5E-s7735058--4458102e858db2150ea68f4efbdc62eb.nii.gz

IACAS/sub-0025457/ses-2/mri/anon_msub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/mp/MD5E-s6968123--ad2d2c1a32a00fb34b0e6152c320b8e2.nii.gz/MD5E-s6968123--ad2d2c1a32a00fb34b0e6152c320b8e2.nii.gz

IACAS/sub-0025457/ses-2/mri/cat_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/vj/MD5E-s105609--ed5c001ed07176e327fc75bee783e9db.nii.gz/MD5E-s105609--ed5c001ed07176e327fc75bee783e9db.nii.gz

IACAS/sub-0025457/ses-2/mri/cobra_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025457/ses-2/mri/cobra_sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/hammers_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025457/ses-2/mri/hammers_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025457/ses-2/mri/ibsr_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025457/ses-2/mri/ibsr_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/p8/MD5E-s157104--c7576b498c7a9cfe3150afa788e183c9.nii.gz/MD5E-s157104--c7576b498c7a9cfe3150afa788e183c9.nii.gz

IACAS/sub-0025457/ses-2/mri/it_sub-0025457_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/wF/MD5E-s282--323bdae41a92cd029fe8febdaab0fe67.mat/MD5E-s282--323bdae41a92cd029fe8febdaab0fe67.mat

IACAS/sub-0025457/ses-2/mri/it_sub-0025457_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/Kf/MD5E-s283--007454d73aad366f93e195a5a3dd268c.mat/MD5E-s283--007454d73aad366f93e195a5a3dd268c.mat

IACAS/sub-0025457/ses-2/mri/iy_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/PK/MD5E-s49191333--4d89e0b4ba103100037b177c8620a32e.nii.gz/MD5E-s49191333--4d89e0b4ba103100037b177c8620a32e.nii.gz

IACAS/sub-0025457/ses-2/mri/julichbrain_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025457/ses-2/mri/julichbrain_sub-0025457_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025457/ses-2/mri/lpba40_sub-0025457_ses-2_run-1_T1w.csv

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IACAS/sub-0025457/ses-2/mri/lpba40_sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/m0wp1sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/m0wp2sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/m0wp3sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/mori_sub-0025457_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025457/ses-2/mri/mori_sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/mwp1sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/mwp2sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/mwp3sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/neuromorphometrics_sub-0025457_ses-2_run-1_T1w.csv

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IACAS/sub-0025457/ses-2/mri/neuromorphometrics_sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/p0sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/p1sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/p2sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/p3sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/rp1sub-0025457_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025457/ses-2/mri/rp2sub-0025457_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025457/ses-2/mri/rp3sub-0025457_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025457/ses-2/mri/t_sub-0025457_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025457/ses-2/mri/t_sub-0025457_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025457/ses-2/mri/thalamus_sub-0025457_ses-2_run-1_T1w.csv

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IACAS/sub-0025457/ses-2/mri/thalamus_sub-0025457_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025457/ses-2/mri/wj_sub-0025457_ses-2_run-1_T1w.nii.gz

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