relacsplugins.cfg 14 KB

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  1. *Metadata
  2. Recording:
  3. Recording quality: [ good, good, poor, Poor, Fair, Good ]
  4. Comment : nonresponsive
  5. maybe a deep E-cell:
  6. Experimenter : [ Fabian Sinz, Janez Presern, Fabian Sinz, Juan Sehuanes, Carolin Sachgau, Jie Zhang, Jan Grewe, Fabian Sinz, Fabian Sinz, Jan Grewe, Jan Benda ]
  7. WaterTemperature : 27°C
  8. WaterConductivity: 232uS/cm
  9. Cell:
  10. CellType (Cell type) : [ I-Cell, unknow, E-Cell, unkown, E-cell, E-cell superficial, I-Cell, P-unit, Ampullary, T-unit ]
  11. Structure (Recording location): [ Brain, Nerve, Brain ]
  12. BrainRegion : [ ELL, Torus, n.A., ELL ]
  13. BrainSubRegion : [ CLS, LS, CLS, CMS, MS ]
  14. Depth : -737um
  15. Lateral position : 1.3mm
  16. Transverse section : -5
  17. Subject:
  18. Species : [ Apteronotus leptorhynchus, Apteronotus albifrons, Apteronotus leptorhynchus ]
  19. Gender (Sex): [ unknown, unknown, Male, Female ]
  20. Size : 15cm
  21. Weight : 8.1g
  22. Identifier : "2014lepto0066"
  23. -Preparation-:
  24. Type : [ in vivo, in vivo, slice ]
  25. Anaesthesia : true
  26. Anaesthetic (Drug) : MS 222
  27. AnaestheticDose (Concentration): 100mg/l
  28. LocalAnaesthesia : true
  29. LocalAnaesthetic (Drug) : Lidocaine
  30. Immobilization : true
  31. Immobilization (Drug) : Tubocurarin 5mg/L
  32. ImmobilizationDose : 60ul
  33. *Control: Session
  34. ephys: true
  35. *Control: AmplifierControl
  36. initmode : [ Bridge, Current-clamp, Voltage-clamp, Manual selection ]
  37. resistancecurrent: 1nA
  38. adjust : false
  39. maxresistance : 100MOhm
  40. buzzpulse : 1000ms
  41. showbridge : true
  42. showcc : false
  43. showvc : false
  44. showmanual : false
  45. *Control: SpectrumAnalyzer
  46. intrace : [ GlobalEFieldStimulus, V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  47. origin : [ before end of data, before signal, after signal ]
  48. offset : 0ms
  49. duration: 1000ms
  50. size : [ "8192", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  51. overlap : true
  52. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  53. fmax : 500Hz
  54. decibel : true
  55. pmin : -50dB
  56. *Model: PUnitModel
  57. General:
  58. EOD:
  59. eodtype : [ Sine, None, Sine, Apteronotus, Eigenmannia ]
  60. eodfreq : 800Hz
  61. eodfreqsd : 10Hz
  62. eodfreqtau : 10000s
  63. eodlocalamplitude : 1mV/cm
  64. eodglobalamplitude: 1mV/cm
  65. localstimulusgain : 1.00
  66. globalstimulusgain: 0.00
  67. stimulusgain : 1.00
  68. Spikes:
  69. voltagescale: 0.5
  70. Spike generator:
  71. spikemodel: [ Wang-Buzsaki, Stimulus, Morris-Lecar, Hodgkin-Huxley, Connor, Wang-Buzsaki ]
  72. noised : 0
  73. deltat : 0.05ms
  74. integrator: [ Euler, Midpoint, Runge-Kutta 4 ]
  75. Voltage-gated current 1 - activation only:
  76. gmc : 0
  77. emc : -90mV
  78. mvmc : -40mV
  79. mwmc : 10mV
  80. taumc: 10ms
  81. Voltage-gated current 2 - activation and inactivation:
  82. gmhc : 0
  83. emhc : -90mV
  84. mvmhc : -40mV
  85. mwmhc : 10mV
  86. taummhc: 10ms
  87. pmmhc : 1
  88. hvmhc : -40mV
  89. hwmhc : 10mV
  90. tauhmhc: 10ms
  91. pmhhc : 1
  92. *Model: Stimulus
  93. Input:
  94. gain : 1
  95. offset: 0muA/cm^2
  96. *Model: Morris-Lecar
  97. General:
  98. params: [ Custom, Type I, Type II ]
  99. Calcium current:
  100. gca : 4nS
  101. eca : 120mV
  102. mvca: -1.2mV
  103. mkca: 18mV
  104. Potassium current:
  105. gk : 8nS
  106. ek : -84mV
  107. mvk : 12mV
  108. mkk : 17.4mV
  109. mphik: 0.067kHz
  110. Leak current:
  111. gl: 2nS
  112. el: -60mV
  113. c : 20pF
  114. Input:
  115. timescale: 10
  116. gain : 1
  117. offset : 40muA/cm^2
  118. *Model: Hodgkin-Huxley
  119. Sodium current:
  120. gna: 120mS/cm^2
  121. ena: 50mV
  122. Potassium current:
  123. gk: 36mS/cm^2
  124. ek: -77mV
  125. Leak current:
  126. gl : 0.3mS/cm^2
  127. el : -54.4mV
  128. c : 1muF/cm^2
  129. phi: 1
  130. Input:
  131. gain : 1
  132. offset: 0muA/cm^2
  133. *Model: Connor
  134. Sodium current:
  135. gna: 120mS/cm^2
  136. ena: 50mV
  137. Potassium current:
  138. gk: 20mS/cm^2
  139. ek: -77mV
  140. A current:
  141. gka: 47mS/cm^2
  142. eka: -80mV
  143. Leak current:
  144. gl : 0.3mS/cm^2
  145. el : -22mV
  146. c : 1muF/cm^2
  147. phi: 1
  148. Input:
  149. gain : 1
  150. offset: 0muA/cm^2
  151. *Model: Wang-Buzsaki
  152. Sodium current:
  153. gna: 35mS/cm^2
  154. ena: 55mV
  155. Potassium current:
  156. gk: 9mS/cm^2
  157. ek: -90mV
  158. Leak current:
  159. gl : 0.1mS/cm^2
  160. el : -65mV
  161. c : 1muF/cm^2
  162. phi: 5
  163. Input:
  164. gain : 1
  165. offset: 0muA/cm^2
  166. *Event Detector: Spikes-1
  167. Detector:
  168. minthresh: 9.7mV
  169. decay : 1sec
  170. ratio : 5%
  171. testwidth: false
  172. maxwidth : 2.0ms
  173. Indicators:
  174. resolution : 0.10mV
  175. trendthresh: 10%
  176. trendtime : 2.0sec
  177. *Event Detector: EOD
  178. threshold : 0.44mV
  179. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  180. *Event Detector: Chirps
  181. minthresh: 10Hz
  182. *Event Detector: LocalEOD-1
  183. threshold : 0.78mV
  184. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  185. *Event Detector: LocalBeat-1
  186. minthresh: 0.120mV
  187. *Event Detector: GlobalEFieldStimulus
  188. threshold : 10.382mV
  189. interpolation: [ linear interpolation, closest datapoint, linear interpolation, linear fit, quadratic fit ]
  190. *RePro: Pause
  191. duration : 1sec
  192. savedata : false
  193. plotwidth: 0sec
  194. *RePro: Record
  195. duration : 1sec
  196. plotwidth: 0sec
  197. *RePro: SaveTraces
  198. General:
  199. duration: 1sec
  200. savedata: false
  201. split : false
  202. Analog input traces:
  203. trace-V-1 : true
  204. trace-EOD : true
  205. trace-LocalEOD-1 : true
  206. trace-GlobalEFieldStimulus: true
  207. Events:
  208. events-Spikes-1 : true
  209. events-EOD : true
  210. events-Chirps : true
  211. events-LocalEOD-1 : true
  212. events-LocalBeat-1-1 : true
  213. events-LocalBeat-1-2 : true
  214. events-GlobalEFieldStimulus: true
  215. *RePro: SetAttenuatorGain
  216. outrace : V-1
  217. gain : 1
  218. interactive: true
  219. *RePro: SetInputGain
  220. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  221. gainindex : 0
  222. interactive: true
  223. *RePro: SetOutput
  224. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  225. value : 0V
  226. interactive: false
  227. *RePro: Spectrogram
  228. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  229. width : 100ms
  230. step : 0ms
  231. tmax : 10s
  232. duration: 0s
  233. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  234. overlap : true
  235. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  236. powermax: true
  237. fmax : 2000Hz
  238. pmax : 0dB
  239. pmin : -50dB
  240. *RePro: TransferFunction
  241. Stimulus:
  242. outtrace : [ GlobalEField, GlobalEFieldAM, V, I ]
  243. offsetbase: [ custom, current ]
  244. offset : 0V
  245. amplitude : 1V
  246. clip : 4
  247. intensity : 1
  248. fmax : 1000Hz
  249. duration : 1000ms
  250. pause : 1000ms
  251. repeats : 100
  252. Analysis:
  253. intrace : [ V-1, EOD, LocalEOD-1, GlobalEFieldStimulus ]
  254. size : [ "1024", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  255. overlap : true
  256. window : [ Hanning, Bartlett, Blackman, Blackman-Harris, Hamming, Hanning, Parzen, Square, Welch ]
  257. plotstdevs : true
  258. plotcoherence: true
  259. *RePro: Wait
  260. absdate: false
  261. date : ~
  262. days : 0days
  263. time : "00:00:00.000"
  264. *RePro: BridgeTest
  265. amplitude: 1V
  266. duration : 10ms
  267. pause : 100ms
  268. average : 10
  269. plottrace: true
  270. *RePro: CapacityCompensation
  271. amplitude : 1V
  272. duration : 200ms
  273. frequency : 100Hz
  274. skipcycles: 10
  275. pause : 100ms
  276. *RePro: Iontophoresis
  277. durationpos : 1s
  278. amplitudepos : 1V
  279. pausepos : 1s
  280. durationneg : 1s
  281. amplitudeneg : 1V
  282. pauseneg : 1s
  283. fortunes : true
  284. fortuneperiod: 10s
  285. *RePro: Beats
  286. Stimulation:
  287. duration : 10seconds
  288. pause : 20seconds
  289. ramp : 0.5seconds
  290. deltafrange : "10"
  291. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  292. fixeddf : false
  293. amplitude : 1mV/cm
  294. repeats : 10
  295. fakefish : 0Hz
  296. Chirps:
  297. generatechirps : false
  298. chirpsize : 100Hz
  299. chirpwidth : 100ms
  300. chirpampl : 0%
  301. chirpkurtosis : 1
  302. chirpfrequencies: ~
  303. chirptimesfile : ~
  304. Analysis:
  305. before : 1seconds
  306. after : 1seconds
  307. averagetime : 1seconds
  308. showstimulus: false
  309. split : false
  310. savetraces : false
  311. *RePro: CalibEField
  312. General:
  313. reset : false
  314. resetval : 0.1
  315. am : false
  316. beatfreq : 20Hz
  317. frequency: 600Hz
  318. duration : 600ms
  319. pause : 10ms
  320. Range:
  321. amplsel : [ contrast, amplitude ]
  322. targetcontrast : 20%
  323. mincontrast : 10%
  324. maxcontrast : 40%
  325. targetamplitude: 1mV/cm
  326. minamplitude : 0.5mV/cm
  327. maxamplitude : 2mV/cm
  328. numintensities : 10
  329. *RePro: JAR
  330. Stimulation:
  331. duration : 10seconds
  332. pause : 10seconds
  333. ramp : 0.5seconds
  334. deltafstep : 2Hz
  335. deltafmax : 12Hz
  336. deltafmin : -12Hz
  337. deltafrange : ~
  338. deltafshuffle: [ Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  339. repeats : 200
  340. Amplitudes:
  341. amplsel : [ contrast, absolute ]
  342. contrastmax : 20%
  343. contrastmin : 10%
  344. contraststep: 20%
  345. amplmin : 1mV/cm
  346. amplmax : 2mV/cm
  347. amplstep : 1mV/cm
  348. S&timulus:
  349. genstim : true
  350. sinewave: true
  351. file : ~
  352. sigstdev: 1
  353. warpfile: false
  354. fakefish: 0Hz
  355. A&nalysis:
  356. before : 1seconds
  357. after : 8seconds
  358. savetraces : true
  359. jaraverage : 500ms
  360. chirpaverage: 20ms
  361. eodsavetime : 1000ms
  362. *RePro: LinearField
  363. duration: 1s
  364. *RePro: ManualJAR
  365. deltaf : 0.0Hz
  366. amplitude : 1.0mV
  367. duration : 10seconds
  368. ramp : 0.5seconds
  369. fakefish : 0Hz
  370. before : 1seconds
  371. after : 1seconds
  372. averagetime: 1seconds
  373. split : false
  374. savetraces : false
  375. *RePro: BaselineActivity
  376. Timing:
  377. duration: 300ms
  378. repeats : 0
  379. Analysis:
  380. isimax : 20ms
  381. isistep : 0.2ms
  382. ratedt : 0.05ms
  383. ratetmax: 2ms
  384. Files:
  385. eodduration : 2000ms
  386. saveeodtrace: false
  387. saveeodtimes: false
  388. Control:
  389. auto : [ never, once, always ]
  390. adjust: false
  391. *RePro: Chirps
  392. Chirp parameter:
  393. nchirps : 10
  394. beatpos : 10
  395. beatstart : 0.25
  396. minspace : 200ms
  397. firstspace : 200ms
  398. chirpsize : 60Hz
  399. chirpwidth : 14ms
  400. chirpampl : 2%
  401. chirpsel : [ generated, from file ]
  402. chirpkurtosis: 1
  403. file : [ /home/efish/Desktop/doublePeakChirp.dat, ~, /home/efish/Desktop/doublePeakChirp.dat ]
  404. Beat parameter:
  405. deltaf : 200Hz
  406. contrast: 20%
  407. am : true
  408. sinewave: true
  409. playback: false
  410. pause : 1000ms
  411. repeats : 6
  412. Analysis:
  413. sigma : 2ms
  414. adjust: false
  415. *RePro: FICurve
  416. Test-Intensities:
  417. duration : 400ms
  418. maxintfac : 120%
  419. minintfac : 80%
  420. nints : 16
  421. repeats : 1
  422. blockrepeats : 10
  423. singlerepeats: 1
  424. intshuffle : [ AlternateOutUp, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  425. intincrement : -2
  426. Pre-Intensities:
  427. preduration : 0ms
  428. maxpreintfac : 140%
  429. minpreintfac : 60%
  430. npreints : 3
  431. preintshuffle: [ AlternateInDown, Up, Down, AlternateInUp, AlternateInDown, AlternateOutUp, AlternateOutDown, Random, PseudoRandom ]
  432. Control:
  433. am : true
  434. pause : 1000ms
  435. delay : 200ms
  436. onsettime : 50ms
  437. rangeintincrement: 4
  438. minrate : 40Hz
  439. minratefrac : 15%
  440. adjust : false
  441. *RePro: FileStimulus
  442. Stimulus:
  443. file : [ /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat, ~, /home/efish/stimuli/whitenoise/gwn300Hz50s0.3.dat ]
  444. sigstdev : 0.3
  445. duration : 10000ms
  446. pause : 1000ms
  447. amplsel : [ contrast, absolute ]
  448. contrast : 10%
  449. amplitude: 1mV/cm
  450. am : true
  451. repeats : 22
  452. Additional noise:
  453. noisetype : [ none, Gaussian-White, Ornstein-Uhlenbeck ]
  454. uppercutoff : 600Hz
  455. lowercutoff : 0Hz
  456. noisetau : 10ms
  457. noisecontrast: 5%
  458. noiseampl : 80mV/cm
  459. Analysis:
  460. binwidth: 5ms
  461. before : 0ms
  462. after : 0ms
  463. plotpsd : false
  464. psdsize : [ "256", "64", "128", "256", "512", "1024", "2048", "4096", "8192", "16384", "32768", "65536", "131072", "262144", "524288", "1048576" ]
  465. adjust : false
  466. *RePro: SAM
  467. Stimulus:
  468. duration : 1000ms
  469. pause : 100ms
  470. freqsel : [ relative to EOD, absolute ]
  471. deltaf : -500Hz
  472. contrast : 10%
  473. repeats : 10
  474. am : false
  475. sinewave : true
  476. ampl : "0.0"
  477. phase : "0.0"
  478. contrastsel: [ fundamental, peak amplitude ]
  479. Analysis:
  480. skip : 0.5Periods
  481. ratebins: 10
  482. before : 0ms
  483. after : 0ms
  484. adjust : false
  485. *Attenuator-0
  486. gain : 0.81209
  487. offset: 0
  488. *Attenuator-1
  489. gain : 0.075978
  490. offset: 0