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README.md

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-# rat_marmoset_human_MFC_clustering
+Data for "Divergence of rodent and primate medial frontal cortex functional connectivity"
 
-Divergence of rodent and primate medial frontal cortex functional connectivity
+Naming of files:
+$species:
+h=human
+m=marmoset
+r=rat
+
+$cluster:
+c1-c4=clusters 1-4
+c1-10=cluters 1-10 *For human area 24 posterior subclustering
+c1-7=cluters 1-7 *For marmoset LFC clustering
+
+$rois
+Au1 = primary auditory cortex
+PPC = posterior parietal cortex
+S1 = primary somatosensory
+M1 = primary motor
+Amygdala = Amygdala
+Insula = Insula
+striatum = striatum
+1-10 = 1-10 human area 24 posterior
+
+
+Description of contained files:
+$species_$cluster_map: .nii.gz seed resting state maps from each of the 4 clusters, in each species
+
+$species_$roi: .nii.gz files of individual ROIs in respective template spaces
+
+$species_mfc_$cluster: clustering solutions for each species
+
+$species_$cluster_24p: .nii.gz seed resting state maps from each of the 10 area 24p subclusters
+
+$species_$roi_24p_roi: .nii.gz files of individual ROIs for each of the 10 area 24p subclusters
+
+$species_LFC_$cluster_LFC: .nii.gz seed resting state maps from each of the 7 marmoset LFC clusters
+
+*Marmoset LFC clustering solutions provided in previous manuscript, see https://gin.g-node.org/everling_lab_marmosets/Marmoset_LFC_funcitonal_boundaries
+
+*To derive fingerprints and resultant cosine similarity, please use publicly available code as follows:
+1. Extract timecourse from each roi (from RS maps): https://afni.nimh.nih.gov/pub/dist/doc/program_help/3dmaskave.html
+
+2. Normalize; in matlab: e.g., r_mfc_c1 = rescale(dlmread('r_mfc_c1.txt')
+
+3. Calculate cosine similarity: https://www.mathworks.com/matlabcentral/fileexchange/62978-getcosinesimilarity-x-y
+
+4. Plot fingerprint: https://www.mathworks.com/matlabcentral/fileexchange/30305-spider-rader-chart-for-multi-data
+
+*Template anatomical files available for download through respective publications:
+1. Marmoset: C. Liu, et al., A digital 3D atlas of the marmoset brain based on multi-modal MRI. Neuroimage 169, 106–116 (2018).
+2. Rat: G. Paxinos, C. Watson, E. Calabrese, A. Badea, G. A. Johnson, MRI/DTI atlas of the rat brain.
+3. Human: Available through AFNI: https://afni.nimh.nih.gov/AFNIAtlases
+
+*Please contact Dr. Yuki Hori (yhori@uwo.ca) for permutation testing code, made available upon reasonable request.

datacite.yml

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+# Metadata for DOI registration according to DataCite Metadata Schema 4.1.
+# For detailed schema description see https://doi.org/10.5438/0014
+
+## Required fields
+
+# The main researchers involved. Include digital identifier (e.g., ORCID)
+# if possible, including the prefix to indicate its type.
+authors:
+  -
+    firstname: "David"
+    lastname: "Schaeffer"
+    affiliation: "University of Western Ontario"
+    id: "ORCID:0000-0001-2345-6789"
+
+
+# A title to describe the published resource.
+title: "Divergence of rodent and primate medial frontal cortex functional connectivity"
+
+# Additional information about the resource, e.g., a brief abstract.
+description: |
+  Example description
+  that can contain linebreaks
+  but has to maintain indentation.
+
+# Lit of keywords the resource should be associated with.
+# Give as many keywords as possible, to make the resource findable.
+keywords:
+  -common marmoset
+  -rat
+  -human
+  -resting state functional magnetic resonance imaging
+  -frontal cortex
+
+# License information for this resource. Please provide the license name and/or a link to the license.
+# Please add also a corresponding LICENSE file to the repository.
+license:
+  name: "Attribution 4.0 International (CC BY 4.0)"
+  url: "https://creativecommons.org/licenses/by/4.0/"
+
+
+
+## Optional Fields
+
+# # Funding information for this resource.
+# # Separate funder name and grant number by comma.
+# funding:
+#   - "DFG, DFG.12345"
+#   - "EU, EU.12345"
+#
+#
+# # Related publications. reftype might be: IsSupplementTo, IsDescribedBy, IsReferencedBy.
+# # Please provide digital identifier (e.g., DOI) if possible.
+# # Add a prefix to the ID, separated by a colon, to indicate the source.
+# # Supported sources are: DOI, arXiv, PMID
+# references:
+#   -
+#     id: "doi:10.xxx/zzzz"
+#     reftype: "IsSupplementTo"
+#     name: "PublicationName1"
+#   -
+#     id: "arxiv:mmmm.nnnn"
+#     reftype: "IsSupplementTo"
+#     name: "PublicationName2"
+#   -
+    id: "pmid:nnnnnnnn"
+    reftype: "IsReferencedBy"
+    name: "PublicationName3"
+
+
+# Resource type. Default is Dataset, other possible values are Software, DataPaper, Image, Text.
+resourcetype: Dataset