studyforrest-ppa-analysis/sub-20/2nd-lvl_audio-ppa-ind.gfeat/logs/feat2_pre

</pre><hr>Higher-level input files preparation<br><pre>

/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_mr2JOF -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_3X4cn0 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_3d5x0o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_FbkuIo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_3jTF1B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_mP0ixL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_FBFfIV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_M8Vho2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_MfH2jc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_zHkG4l -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_587Ybz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_AiO0ax -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_bGae3G -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_Dok0fS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Ee1ve2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_Km9gBa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_7tI7bo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_DtfBJy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_Q8lUEw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_nPL2lG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_JrMtZT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_8zWVI3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_KkKd5b -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_NqsOUl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_fH0Owv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_mG7gcy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_l8rDUI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_RXI0LS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_vlD6y4 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_Dtphjj -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_68d1WE -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_POVaAU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_z7eCf5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_wQMQhi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_Ex8S7r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_BMHkwC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_GIfgrL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_l0lfRN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_ULm3WV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_ALuRq6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_LidI7i -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_pjWnKt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_rBjUwD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Gz83JL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_MilZsP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_MiIlyX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_HNGdb7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_48iiRh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_X0taJu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_u0nlwE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_XOjs3N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_sj8gSM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_gXohFZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_7lCsA8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_PE6jSl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_aZtwkw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_h2JsyE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_iqB7vS -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_IuerCV -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_VM4nul -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_lAjCEI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_nOXciS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_eL8rMV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_BpRoD5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_bS3cdf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_qeRh4o -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_UVaAgx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_b0H5WH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_f2AwTU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_Fp13u5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_W6eDs6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_tKZ8gg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_2fLV5p -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_MtmRzA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_4yxR8J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_iyvMlS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_ZsRk95 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_Y4wyz5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_EDJvTd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_qMWxao -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_4V8YkB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_8d9LQK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_KMfuzV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_S2CZC3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_ZBrkq5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_zkN0Qf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_vs6BDr -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_tm0YmG -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_Rpk2D2 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_WpjIPk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_zH7axu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_ugy1pE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_fMM8cO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_NSK4kW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_hKIL66 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_4HvIRg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_QRIDOh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_2Yt9rs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_ks0p0B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_trn9KP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_sqUGeZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_KtMZv8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_yr0h0h -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_rIVhWk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_56VSzu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_I2h02C -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_FEBRHM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_vF5qfX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_1Ch599 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_WEHv7j -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Xui2Ot -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_6iYn6r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_82wyqB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_i18j3L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_tywd8V -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_fo0lF7 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_IzRWOm -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_zLgWTx -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_NxN4fY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_UFCkG6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_ZN4y4g -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_KbcY4q -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_6ia5Ot -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_WhaqKD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_BWjcnN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_TnJetW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_vXS6j6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_qmqtKf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_un1xCs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_QxHg5C -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_rEjluE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_j7rAjO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_yfZxVU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_rc6mN4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_pQBtRh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_kEQNEr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_Lp9QmC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_ThaFlz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_BeiS2J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_P1YqOT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_OKMh33 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_42q8Hd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_gpxqLq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_cqmbjA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_A4j3WJ -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_F9lhyQ -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_IVTRNb -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_TVoMmA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_3RCXdO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_YmOJ4L -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_YXlgLW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_HEL8y6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Ydgknj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_FiMfYt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_rfWB3B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_iUKipP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_VMLT9N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_hflk0X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_OA5az7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_pdvNJk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_SA5lzu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Ub8PHE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_3i4XQN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_ho6HRO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_Mp7yp0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_h7Rv59 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_oc9L8j -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_m5dYrs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_lFzV3B -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_GlsBHL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_uCs9rW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_J8F6aZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_HQjqS8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_hKKOWk -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_fTkyEz -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_z6kYIS -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_UjUgta -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_NIgZqj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_3Bn2bt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_AmpiaE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_3vy05N -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_APfGCX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_YpT1m7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_aV16m5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_mvCRli -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_sGsCUs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_gi52FC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_a742vM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_AlgQWU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_abmlz5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_yv8CM7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_xNcn5f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_Ve6ZPq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_lnyzkA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_2Ha2eO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_40fzZX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_2EhLz7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_YECVmh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_DcXHBf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_xXi7ip -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_1qdQez -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_WpBEpM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_bbuKEW -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat

/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_grPySa -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_rATuRo -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_V6z4hO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_yAIzcY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope11 -out frgrot_DnyEp6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope12 -out frgrot_19Lbgk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope13 -out frgrot_0zVPdl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_9OJoZu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_yG98XE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_HsPXSO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_CWPdrZ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_6dUjl7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_vaTB9h -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_uX1NAk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_2w4PZs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_8AUqyC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_zaIC9M -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope11 -out frgrot_ubtT2Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope12 -out frgrot_DX5KLa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope13 -out frgrot_uvSVOi -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_pBTgft -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_h7lUNv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_gA3W4D -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_LJzjJN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_m6c1vY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_TCIJ07 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_RymXTk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_3kjZFv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float


/usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_6evKJv -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char


/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg/standard bg_image

/usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/mask

mkdir -p inputreg

/usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum

/usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay

/usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png

/usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique

/usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique

/usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay

/usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png

/bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif

/usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask

/usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/mean_func

/usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func

/usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1

/usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1

printf '0.036220672499999995 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope1

/usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t1

/usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1

/usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2

/usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2

printf '0.03809893375 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope2

/usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t2

/usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2

/usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3

/usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3

printf '0.01731664 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope3

/usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t3

/usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3

/usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4

/usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4

printf '0.03532390625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope4

/usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t4

/usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4

/usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5

/usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5

printf '0.02982784875 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope5

/usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t5

/usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5

/usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6

/usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6

printf '0.02917550625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope6

/usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t6

/usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6

/usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7

/usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7

printf '0.0248213025 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope7

/usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t7

/usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7

/usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8

/usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8

printf '0.08684008375 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope8

/usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t8

/usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8

/usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9

/usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9

printf '0.06037862625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope9

/usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t9

/usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9

/usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10

/usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10

printf '0.03953572625 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope10

/usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t10

/usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10

/usr/share/fsl/5.0/bin/fslmerge -t cope11  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11

/usr/share/fsl/5.0/bin/fslmaths cope11 -mas mask cope11

printf '0.0465150475 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope11  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope11 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope11

/usr/share/fsl/5.0/bin/fslmaths varcope11 -mas mask varcope11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope11 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t11  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t11

/usr/share/fsl/5.0/bin/fslmaths tdof_t11 -mas mask tdof_t11

/usr/share/fsl/5.0/bin/fslmerge -t cope12  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12

/usr/share/fsl/5.0/bin/fslmaths cope12 -mas mask cope12

printf '0.029742005 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope12  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope12 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope12

/usr/share/fsl/5.0/bin/fslmaths varcope12 -mas mask varcope12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope12 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t12  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t12

/usr/share/fsl/5.0/bin/fslmaths tdof_t12 -mas mask tdof_t12

/usr/share/fsl/5.0/bin/fslmerge -t cope13  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13

/usr/share/fsl/5.0/bin/fslmaths cope13 -mas mask cope13

printf '0.04307867 ' >> design.lcon

/usr/share/fsl/5.0/bin/fslmerge -t varcope13  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/varcope13 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/varcope13

/usr/share/fsl/5.0/bin/fslmaths varcope13 -mas mask varcope13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 409   /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 399   /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 396   /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 446   /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 420   /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 397   /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 500   /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/cope13 -mul 0 -add 296   /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmerge -t tdof_t13  /data/project/studyforrest_ppa/sub-20/run-1_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-2_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-3_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-4_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-5_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-6_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-7_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13 /data/project/studyforrest_ppa/sub-20/run-8_audio-ppa-ind.feat/reg_standard/stats/FEtdof_t13

/usr/share/fsl/5.0/bin/fslmaths tdof_t13 -mas mask tdof_t13