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studyforrest-ppa-analysis
forked from chaeusler/studyforrest-ppa-analysis
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10.12751/g-node.7is9s6
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2nd-lvl_movie-ppa-ind.gfeat
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  7. <h2>Progress Report / Log</h2>
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  8. Started at Thu 19 Mar 2020 06:58:04 AM CET<p>
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  9. Feat main script<br><pre>
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  11. /bin/cp /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.fsf design.fsf
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    151. 

  151. 

  152. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 3683  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope9.feat -stop
    153. 

  153. 8026
    154. 

  154. 

  155. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 5692  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -I 10 -flame1
    156. 

  156. 9606
    157. 

  157. 

  158. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 9606 -t ./.flame
    159. 

  159. 12328
    160. 

  160. 

  161. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 12328  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -flame3
    162. 

  162. 17642
    163. 

  163. 

  164. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 17642  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -poststats 1
    165. 

  165. 18605
    166. 

  166. 

  167. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 18605  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat -stop
    168. 

  168. 22850
    169. 

  169. 

  170. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 22398,4325,18531,32749,14967,29047,11373,25689,8026,22850  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat/cope10.feat/design.fsf -D /data/project/studyforrest_ppa/sub-17/2nd-lvl_movie-ppa-ind.gfeat -stop
    171. 

  171. </pre><hr>Higher-level input files preparation<br><pre>
    172. 

  172. 

  173. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat
    174. 

  174. 

  175. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_E3lx26 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    176. 

  176. 

  177. 

  178. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_drRguA -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    179. 

  179. 

  180. 

  181. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_BHISTW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    182. 

  182. 

  183. 

  184. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_StnFTb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    185. 

  185. 

  186. 

  187. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_1Z7WTn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    188. 

  188. 

  189. 

  190. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_XFZtlz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    191. 

  191. 

  192. 

  193. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_gHH9vO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    194. 

  194. 

  195. 

  196. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_aOznr0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    197. 

  197. 

  198. 

  199. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_miwk63 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    200. 

  200. 

  201. 

  202. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_Wrqxyk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    203. 

  203. 

  204. 

  205. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_KD5AQu -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    206. 

  206. 

  207. 

  208. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_Q3GzOK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    209. 

  209. 

  210. 

  211. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_mNfI4Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    212. 

  212. 

  213. 

  214. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Csv300 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    215. 

  215. 

  216. 

  217. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_b230cf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    218. 

  218. 

  219. 

  220. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_r8ZX8r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    221. 

  221. 

  222. 

  223. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_6rojvG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    224. 

  224. 

  225. 

  226. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_Z6OPlS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    227. 

  227. 

  228. 

  229. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_cvROi8 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    230. 

  230. 

  231. 

  232. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_PUHI48 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    233. 

  233. 

  234. 

  235. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_ymQHil -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    236. 

  236. 

  237. 

  238. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_tZr4xz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    239. 

  239. 

  240. 

  241. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_BJZyaK -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    242. 

  242. 

  243. 

  244. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat
    245. 

  245. 

  246. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_MFwFw0 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    247. 

  247. 

  248. 

  249. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_tvYmkk -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    250. 

  250. 

  251. 

  252. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_TguftO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    253. 

  253. 

  254. 

  255. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_QTYOR0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    256. 

  256. 

  257. 

  258. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_DKlHXg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    259. 

  259. 

  260. 

  261. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_o8Qp5i -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    262. 

  262. 

  263. 

  264. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_UyEe0v -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    265. 

  265. 

  266. 

  267. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_jUqZyL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    268. 

  268. 

  269. 

  270. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_dqzk4X -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    271. 

  271. 

  272. 

  273. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_cwpLv9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    274. 

  274. 

  275. 

  276. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_jIo5Lg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    277. 

  277. 

  278. 

  279. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_hZpeYs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    280. 

  280. 

  281. 

  282. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_cAgH7D -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    283. 

  283. 

  284. 

  285. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_lT2PbQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    286. 

  286. 

  287. 

  288. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_7EFQu6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    289. 

  289. 

  290. 

  291. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_fpYBKh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    292. 

  292. 

  293. 

  294. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_gm9Ign -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    295. 

  295. 

  296. 

  297. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_MFZEKB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    298. 

  298. 

  299. 

  300. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_2fPypO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    301. 

  301. 

  302. 

  303. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_TLhGA2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    304. 

  304. 

  305. 

  306. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_EKzT4b -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    307. 

  307. 

  308. 

  309. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_3QCXuo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    310. 

  310. 

  311. 

  312. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_WzAxqs -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    313. 

  313. 

  314. 

  315. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat
    316. 

  316. 

  317. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_p6Q3fK -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    318. 

  318. 

  319. 

  320. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_WDvane -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    321. 

  321. 

  322. 

  323. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_Ty3ICy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    324. 

  324. 

  325. 

  326. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_cVwUYN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    327. 

  327. 

  328. 

  329. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_MpiAb0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    330. 

  330. 

  331. 

  332. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_dmHmJf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    333. 

  333. 

  334. 

  335. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_WGlZRq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    336. 

  336. 

  337. 

  338. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_qibCFy -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    339. 

  339. 

  340. 

  341. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_U6SrhJ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    342. 

  342. 

  343. 

  344. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_7KHjc0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    345. 

  345. 

  346. 

  347. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_w0fygb -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    348. 

  348. 

  349. 

  350. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_YN9Lcq -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    351. 

  351. 

  352. 

  353. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_TBvwjF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    354. 

  354. 

  355. 

  356. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_8neOeK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    357. 

  357. 

  358. 

  359. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_FXAGuU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    360. 

  360. 

  361. 

  362. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_Bsztab -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    363. 

  363. 

  364. 

  365. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_xxupzm -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    366. 

  366. 

  367. 

  368. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_129ETB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    369. 

  369. 

  370. 

  371. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_sWXcFF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    372. 

  372. 

  373. 

  374. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_61yDwS -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    375. 

  375. 

  376. 

  377. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_qa8ZW3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    378. 

  378. 

  379. 

  380. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_b7xw7f -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    381. 

  381. 

  382. 

  383. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_xiDzks -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    384. 

  384. 

  385. 

  386. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat
    387. 

  387. 

  388. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_9j6O3K -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    389. 

  389. 

  390. 

  391. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_s0Ldq6 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    392. 

  392. 

  393. 

  394. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_1BRUcw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    395. 

  395. 

  396. 

  397. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_S5eJuL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    398. 

  398. 

  399. 

  400. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_Sg7DfQ -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    401. 

  401. 

  402. 

  403. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_gwpLv3 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    404. 

  404. 

  405. 

  406. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_fs6Vgg -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    407. 

  407. 

  408. 

  409. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_pDh57v -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    410. 

  410. 

  411. 

  412. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_20asIK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    413. 

  413. 

  414. 

  415. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_l6kXkX -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    416. 

  416. 

  417. 

  418. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_aRqDJ0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    419. 

  419. 

  420. 

  421. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_aiBQXc -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    422. 

  422. 

  423. 

  424. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_2Vewfs -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    425. 

  425. 

  426. 

  427. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_rE8StE -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    428. 

  428. 

  429. 

  430. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_KcAftR -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    431. 

  431. 

  432. 

  433. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_btyALU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    434. 

  434. 

  435. 

  436. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_rOAat6 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    437. 

  437. 

  438. 

  439. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_aBruwl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    440. 

  440. 

  441. 

  442. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_hvYfGB -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    443. 

  443. 

  444. 

  445. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_RhnpNN -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    446. 

  446. 

  447. 

  448. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_DdAC1Z -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    449. 

  449. 

  450. 

  451. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_9tnZu0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    452. 

  452. 

  453. 

  454. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_G0ycSe -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    455. 

  455. 

  456. 

  457. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat
    458. 

  458. 

  459. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_AlW8Xw -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    460. 

  460. 

  461. 

  462. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_7yKw82 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    463. 

  463. 

  464. 

  465. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_XuefOn -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    466. 

  466. 

  467. 

  468. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_iJCoRz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    469. 

  469. 

  470. 

  471. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_uprlXM -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    472. 

  472. 

  473. 

  474. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_EsoSV0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    475. 

  475. 

  476. 

  477. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_YQOqW5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    478. 

  478. 

  479. 

  480. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_DEAb8k -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    481. 

  481. 

  482. 

  483. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_xw6C6x -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    484. 

  484. 

  485. 

  486. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_hxCn4J -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    487. 

  487. 

  488. 

  489. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_T1qlPV -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    490. 

  490. 

  491. 

  492. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_HTw8I7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    493. 

  493. 

  494. 

  495. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_jf28tf -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    496. 

  496. 

  497. 

  498. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_F0HTSt -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    499. 

  499. 

  500. 

  501. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_QxDJUF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    502. 

  502. 

  503. 

  504. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_mWwP6R -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    505. 

  505. 

  506. 

  507. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_Nks4k7 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    508. 

  508. 

  509. 

  510. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_39ZyJa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    511. 

  511. 

  512. 

  513. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_6pjgan -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    514. 

  514. 

  515. 

  516. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_ZEYBcD -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    517. 

  517. 

  518. 

  519. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_q3OujO -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    520. 

  520. 

  521. 

  522. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_n5PQG0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    523. 

  523. 

  524. 

  525. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_t05Fag -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    526. 

  526. 

  527. 

  528. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat
    529. 

  529. 

  530. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_8zwmuk -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    531. 

  531. 

  532. 

  533. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_2LSiCN -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    534. 

  534. 

  535. 

  536. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_hLgiYj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    537. 

  537. 

  538. 

  539. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_t2KhEo -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    540. 

  540. 

  541. 

  542. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_YgaUAz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    543. 

  543. 

  544. 

  545. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_8auZwP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    546. 

  546. 

  547. 

  548. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_IOgST0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    549. 

  549. 

  550. 

  551. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_6lzDLe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    552. 

  552. 

  553. 

  554. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_CrAH8r -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    555. 

  555. 

  556. 

  557. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_5edknv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    558. 

  558. 

  559. 

  560. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_blY2LH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    561. 

  561. 

  562. 

  563. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_6YPlZT -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    564. 

  564. 

  565. 

  566. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_bibvX9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    567. 

  567. 

  568. 

  569. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_Dp5wNl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    570. 

  570. 

  571. 

  572. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_WDFcxp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    573. 

  573. 

  574. 

  575. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_l6ItqC -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    576. 

  576. 

  577. 

  578. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_yCZnER -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    579. 

  579. 

  580. 

  581. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_9WJKN2 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    582. 

  582. 

  583. 

  584. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_QVSPdj -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    585. 

  585. 

  586. 

  587. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_9BtfCx -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    588. 

  588. 

  589. 

  590. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_tMGhAz -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    591. 

  591. 

  592. 

  593. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_PFggjK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    594. 

  594. 

  595. 

  596. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_uzRof0 -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    597. 

  597. 

  598. 

  599. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat
    600. 

  600. 

  601. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_dOcQIe -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    602. 

  602. 

  603. 

  604. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_mfivTA -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    605. 

  605. 

  606. 

  607. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_NI97t4 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    608. 

  608. 

  609. 

  610. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_JVYS8e -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    611. 

  611. 

  612. 

  613. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_AVPFfv -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    614. 

  614. 

  615. 

  616. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_0GnOhG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    617. 

  617. 

  618. 

  619. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_gOkJKK -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    620. 

  620. 

  621. 

  622. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_YEjBC0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    623. 

  623. 

  624. 

  625. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_HveBkd -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    626. 

  626. 

  627. 

  628. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_QJ5OCr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    629. 

  629. 

  630. 

  631. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_FwgGvG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    632. 

  632. 

  633. 

  634. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_U9LBUG -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    635. 

  635. 

  636. 

  637. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_GNf7EW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    638. 

  638. 

  639. 

  640. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_rVNi37 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    641. 

  641. 

  642. 

  643. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_mlELZk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    644. 

  644. 

  645. 

  646. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_9g431A -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    647. 

  647. 

  648. 

  649. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_b8CMAL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    650. 

  650. 

  651. 

  652. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_m6T5BP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    653. 

  653. 

  654. 

  655. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_HNVi35 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    656. 

  656. 

  657. 

  658. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_Iqvreh -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    659. 

  659. 

  660. 

  661. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_LYbX9w -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    662. 

  662. 

  663. 

  664. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_hDBnZH -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    665. 

  665. 

  666. 

  667. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_qcRcVV -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    668. 

  668. 

  669. 

  670. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat
    671. 

  671. 

  672. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in example_func -out frgrot_AI9AJ0 -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    673. 

  673. 

  674. 

  675. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mean_func -out frgrot_0RB3kv -applyxfm -init reg/example_func2standard.mat -interp spline -datatype float
    676. 

  676. 

  677. 

  678. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope1 -out frgrot_4aEHpW -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    679. 

  679. 

  680. 

  681. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope10 -out frgrot_tbxKY0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    682. 

  682. 

  683. 

  684. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope2 -out frgrot_7KRX3b -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    685. 

  685. 

  686. 

  687. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope3 -out frgrot_AT2tPr -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    688. 

  688. 

  689. 

  690. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope4 -out frgrot_NpTeaF -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    691. 

  691. 

  692. 

  693. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope5 -out frgrot_qZRYwP -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    694. 

  694. 

  695. 

  696. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope6 -out frgrot_DQFHqU -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    697. 

  697. 

  698. 

  699. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope7 -out frgrot_zT0oi9 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    700. 

  700. 

  701. 

  702. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope8 -out frgrot_DjTCCk -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    703. 

  703. 

  704. 

  705. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/cope9 -out frgrot_9RQEDA -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    706. 

  706. 

  707. 

  708. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope1 -out frgrot_5aJMFL -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    709. 

  709. 

  710. 

  711. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope10 -out frgrot_JqVHz0 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    712. 

  712. 

  713. 

  714. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope2 -out frgrot_xWNdp5 -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    715. 

  715. 

  716. 

  717. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope3 -out frgrot_5ejeAl -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    718. 

  718. 

  719. 

  720. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope4 -out frgrot_WfXEaw -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    721. 

  721. 

  722. 

  723. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope5 -out frgrot_GxmtJI -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    724. 

  724. 

  725. 

  726. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope6 -out frgrot_EhzXoY -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    727. 

  727. 

  728. 

  729. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope7 -out frgrot_zNQcMa -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    730. 

  730. 

  731. 

  732. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope8 -out frgrot_jB6CQe -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    733. 

  733. 

  734. 

  735. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in stats/varcope9 -out frgrot_2SYLLp -applyxfm -init reg/example_func2standard.mat -interp trilinear -datatype float
    736. 

  736. 

  737. 

  738. /usr/share/fsl/5.0/bin/flirt -ref reg/standard -in mask -out frgrot_cFB3rF -applyxfm -init reg/example_func2standard.mat -interp nearestneighbour -datatype char
    739. 

  739. 

  740. 

  741. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg/standard bg_image
    742. 

  742. 

  743. /usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/mask /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/mask
    744. 

  744. 

  745. mkdir -p inputreg
    746. 

  746. 

  747. /usr/share/fsl/5.0/bin/fslmaths ../mask -mul 8 -Tmean masksum -odt short
    748. 

  748. 

  749. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 8 -add masksum masksum
    750. 

  750. 

  751. /usr/share/fsl/5.0/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 16 masksum_overlay
    752. 

  752. 

  753. /usr/share/fsl/5.0/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
    754. 

  754. 

  755. /usr/share/fsl/5.0/bin/fslmaths masksum -mul 0 maskunique
    756. 

  756. 

  757. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
    758. 

  758. 

  759. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
    760. 

  760. 

  761. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
    762. 

  762. 

  763. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
    764. 

  764. 

  765. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique
    766. 

  766. 

  767. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique
    768. 

  768. 

  769. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique
    770. 

  770. 

  771. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique
    772. 

  772. 

  773. /usr/share/fsl/5.0/bin/fslmaths masksum -thr 7 -uthr 7 -bin -mul maskunique maskunique
    774. 

  774. 

  775. /usr/share/fsl/5.0/bin/overlay 0 0 ../bg_image -a maskunique 0.9 8 maskunique_overlay
    776. 

  776. 

  777. /usr/share/fsl/5.0/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
    778. 

  778. 

  779. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    780. 

  780. 

  781. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
    782. 

  782. 

  783. /usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/mean_func /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/mean_func
    784. 

  784. 

  785. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
    786. 

  786. 

  787. /usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1
    788. 

  788. 

  789. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
    790. 

  790. 

  791. printf '0.05632248625 ' >> design.lcon
    792. 

  792. 

  793. /usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope1 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope1
    794. 

  794. 

  795. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
    796. 

  796. 

  797. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    798. 

  798. 

  799. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    800. 

  800. 

  801. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    802. 

  802. 

  803. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    804. 

  804. 

  805. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    806. 

  806. 

  807. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    808. 

  808. 

  809. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    810. 

  810. 

  811. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope1 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    812. 

  812. 

  813. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t1
    814. 

  814. 

  815. /usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
    816. 

  816. 

  817. /usr/share/fsl/5.0/bin/fslmerge -t cope2  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2
    818. 

  818. 

  819. /usr/share/fsl/5.0/bin/fslmaths cope2 -mas mask cope2
    820. 

  820. 

  821. printf '0.03881766999999999 ' >> design.lcon
    822. 

  822. 

  823. /usr/share/fsl/5.0/bin/fslmerge -t varcope2  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope2 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope2
    824. 

  824. 

  825. /usr/share/fsl/5.0/bin/fslmaths varcope2 -mas mask varcope2
    826. 

  826. 

  827. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    828. 

  828. 

  829. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    830. 

  830. 

  831. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    832. 

  832. 

  833. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    834. 

  834. 

  835. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    836. 

  836. 

  837. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    838. 

  838. 

  839. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    840. 

  840. 

  841. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope2 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    842. 

  842. 

  843. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t2  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t2
    844. 

  844. 

  845. /usr/share/fsl/5.0/bin/fslmaths tdof_t2 -mas mask tdof_t2
    846. 

  846. 

  847. /usr/share/fsl/5.0/bin/fslmerge -t cope3  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3
    848. 

  848. 

  849. /usr/share/fsl/5.0/bin/fslmaths cope3 -mas mask cope3
    850. 

  850. 

  851. printf '0.045786465000000005 ' >> design.lcon
    852. 

  852. 

  853. /usr/share/fsl/5.0/bin/fslmerge -t varcope3  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope3 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope3
    854. 

  854. 

  855. /usr/share/fsl/5.0/bin/fslmaths varcope3 -mas mask varcope3
    856. 

  856. 

  857. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    858. 

  858. 

  859. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    860. 

  860. 

  861. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    862. 

  862. 

  863. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    864. 

  864. 

  865. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    866. 

  866. 

  867. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    868. 

  868. 

  869. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    870. 

  870. 

  871. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope3 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    872. 

  872. 

  873. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t3  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t3
    874. 

  874. 

  875. /usr/share/fsl/5.0/bin/fslmaths tdof_t3 -mas mask tdof_t3
    876. 

  876. 

  877. /usr/share/fsl/5.0/bin/fslmerge -t cope4  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4
    878. 

  878. 

  879. /usr/share/fsl/5.0/bin/fslmaths cope4 -mas mask cope4
    880. 

  880. 

  881. printf '0.0292510125 ' >> design.lcon
    882. 

  882. 

  883. /usr/share/fsl/5.0/bin/fslmerge -t varcope4  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope4 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope4
    884. 

  884. 

  885. /usr/share/fsl/5.0/bin/fslmaths varcope4 -mas mask varcope4
    886. 

  886. 

  887. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    888. 

  888. 

  889. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    890. 

  890. 

  891. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    892. 

  892. 

  893. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    894. 

  894. 

  895. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    896. 

  896. 

  897. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    898. 

  898. 

  899. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    900. 

  900. 

  901. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope4 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    902. 

  902. 

  903. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t4  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t4
    904. 

  904. 

  905. /usr/share/fsl/5.0/bin/fslmaths tdof_t4 -mas mask tdof_t4
    906. 

  906. 

  907. /usr/share/fsl/5.0/bin/fslmerge -t cope5  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5
    908. 

  908. 

  909. /usr/share/fsl/5.0/bin/fslmaths cope5 -mas mask cope5
    910. 

  910. 

  911. printf '0.03936877375 ' >> design.lcon
    912. 

  912. 

  913. /usr/share/fsl/5.0/bin/fslmerge -t varcope5  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope5 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope5
    914. 

  914. 

  915. /usr/share/fsl/5.0/bin/fslmaths varcope5 -mas mask varcope5
    916. 

  916. 

  917. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    918. 

  918. 

  919. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    920. 

  920. 

  921. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    922. 

  922. 

  923. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    924. 

  924. 

  925. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    926. 

  926. 

  927. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    928. 

  928. 

  929. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    930. 

  930. 

  931. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope5 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    932. 

  932. 

  933. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t5  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t5
    934. 

  934. 

  935. /usr/share/fsl/5.0/bin/fslmaths tdof_t5 -mas mask tdof_t5
    936. 

  936. 

  937. /usr/share/fsl/5.0/bin/fslmerge -t cope6  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6
    938. 

  938. 

  939. /usr/share/fsl/5.0/bin/fslmaths cope6 -mas mask cope6
    940. 

  940. 

  941. printf '0.04757384875 ' >> design.lcon
    942. 

  942. 

  943. /usr/share/fsl/5.0/bin/fslmerge -t varcope6  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope6 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope6
    944. 

  944. 

  945. /usr/share/fsl/5.0/bin/fslmaths varcope6 -mas mask varcope6
    946. 

  946. 

  947. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    948. 

  948. 

  949. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    950. 

  950. 

  951. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    952. 

  952. 

  953. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    954. 

  954. 

  955. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    956. 

  956. 

  957. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    958. 

  958. 

  959. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    960. 

  960. 

  961. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope6 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    962. 

  962. 

  963. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t6  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t6
    964. 

  964. 

  965. /usr/share/fsl/5.0/bin/fslmaths tdof_t6 -mas mask tdof_t6
    966. 

  966. 

  967. /usr/share/fsl/5.0/bin/fslmerge -t cope7  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7
    968. 

  968. 

  969. /usr/share/fsl/5.0/bin/fslmaths cope7 -mas mask cope7
    970. 

  970. 

  971. printf '0.0448012375 ' >> design.lcon
    972. 

  972. 

  973. /usr/share/fsl/5.0/bin/fslmerge -t varcope7  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope7 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope7
    974. 

  974. 

  975. /usr/share/fsl/5.0/bin/fslmaths varcope7 -mas mask varcope7
    976. 

  976. 

  977. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    978. 

  978. 

  979. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    980. 

  980. 

  981. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    982. 

  982. 

  983. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    984. 

  984. 

  985. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    986. 

  986. 

  987. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    988. 

  988. 

  989. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    990. 

  990. 

  991. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope7 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    992. 

  992. 

  993. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t7  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t7
    994. 

  994. 

  995. /usr/share/fsl/5.0/bin/fslmaths tdof_t7 -mas mask tdof_t7
    996. 

  996. 

  997. /usr/share/fsl/5.0/bin/fslmerge -t cope8  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8
    998. 

  998. 

  999. /usr/share/fsl/5.0/bin/fslmaths cope8 -mas mask cope8
    1000. 

  1000. 

  1001. printf '0.025913291249999998 ' >> design.lcon
    1002. 

  1002. 

  1003. /usr/share/fsl/5.0/bin/fslmerge -t varcope8  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope8 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope8
    1004. 

  1004. 

  1005. /usr/share/fsl/5.0/bin/fslmaths varcope8 -mas mask varcope8
    1006. 

  1006. 

  1007. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1008. 

  1008. 

  1009. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1010. 

  1010. 

  1011. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1012. 

  1012. 

  1013. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1014. 

  1014. 

  1015. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1016. 

  1016. 

  1017. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1018. 

  1018. 

  1019. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1020. 

  1020. 

  1021. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope8 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1022. 

  1022. 

  1023. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t8  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t8
    1024. 

  1024. 

  1025. /usr/share/fsl/5.0/bin/fslmaths tdof_t8 -mas mask tdof_t8
    1026. 

  1026. 

  1027. /usr/share/fsl/5.0/bin/fslmerge -t cope9  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9
    1028. 

  1028. 

  1029. /usr/share/fsl/5.0/bin/fslmaths cope9 -mas mask cope9
    1030. 

  1030. 

  1031. printf '0.026500553750000003 ' >> design.lcon
    1032. 

  1032. 

  1033. /usr/share/fsl/5.0/bin/fslmerge -t varcope9  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope9 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope9
    1034. 

  1034. 

  1035. /usr/share/fsl/5.0/bin/fslmaths varcope9 -mas mask varcope9
    1036. 

  1036. 

  1037. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1038. 

  1038. 

  1039. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1040. 

  1040. 

  1041. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1042. 

  1042. 

  1043. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1044. 

  1044. 

  1045. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1046. 

  1046. 

  1047. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1048. 

  1048. 

  1049. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1050. 

  1050. 

  1051. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope9 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1052. 

  1052. 

  1053. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t9  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t9
    1054. 

  1054. 

  1055. /usr/share/fsl/5.0/bin/fslmaths tdof_t9 -mas mask tdof_t9
    1056. 

  1056. 

  1057. /usr/share/fsl/5.0/bin/fslmerge -t cope10  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10
    1058. 

  1058. 

  1059. /usr/share/fsl/5.0/bin/fslmaths cope10 -mas mask cope10
    1060. 

  1060. 

  1061. printf '0.08905586125 ' >> design.lcon
    1062. 

  1062. 

  1063. /usr/share/fsl/5.0/bin/fslmerge -t varcope10  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/varcope10 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/varcope10
    1064. 

  1064. 

  1065. /usr/share/fsl/5.0/bin/fslmaths varcope10 -mas mask varcope10
    1066. 

  1066. 

  1067. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 417   /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1068. 

  1068. 

  1069. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 407   /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1070. 

  1070. 

  1071. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 404   /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1072. 

  1072. 

  1073. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 454   /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1074. 

  1074. 

  1075. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 428   /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1076. 

  1076. 

  1077. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 405   /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1078. 

  1078. 

  1079. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 508   /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1080. 

  1080. 

  1081. /usr/share/fsl/5.0/bin/fslmaths /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/cope10 -mul 0 -add 304   /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1082. 

  1082. 

  1083. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t10  /data/project/studyforrest_ppa/sub-17/run-1_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-2_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-3_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-4_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-5_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-6_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-7_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10 /data/project/studyforrest_ppa/sub-17/run-8_movie-ppa-ind.feat/reg_standard/stats/FEtdof_t10
    1084. 

  1084. 

  1085. /usr/share/fsl/5.0/bin/fslmaths tdof_t10 -mas mask tdof_t10
    1086. 

  1086. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
    1087.