We use cookies to ensure you get the best experience on our website
首頁 探索 說明 News
註冊 登入
doi
/
studyforrest-ppa-analysis
派生自 chaeusler/studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
1
0
複刻 0
Files
分支: master
分支列表 標籤列表
studyforrest...
/
3rd-lvl
/
audio-ppa_c9_z3.4.gfeat
/
report_log.html

report_log.html 12 KB
永久連結 文件歷史 Download

12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879808182838485868788899091 
  1. <HTML><HEAD>
    2. 

  2. <!--refreshstart-->
    3. 

  3. 

  4. <!--refreshstop-->
    5. 

  5. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
    6. 

  6. <TITLE>FSL</TITLE></HEAD><BODY><OBJECT data=report.html></OBJECT>
    7. 

  7. <h2>Progress Report / Log</h2>
    8. 

  8. Started at Sat 14 Mar 2020 04:33:28 AM CET<p>
    9. 

  9. Feat main script<br><pre>
    10. 

  10. 

  11. /bin/cp /data/project/studyforrest_ppa/code/3rd-lvl_audio-ppa-grp-9.fsf design.fsf
    12. 

  12. 

  13. /usr/share/fsl/5.0/bin/feat_model design
    14. 

  14. 

  15. mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images
    16. 

  16. 

  17. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat2_pre   /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat -gfeatprep
    18. 

  18. 7365
    19. 

  19. 

  20. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3a_flame -j 7365  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat -I 1 -flame1
    21. 

  21. 3799
    22. 

  22. 

  23. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat3b_flame -j 3799 -t ./.flame
    24. 

  24. 24943
    25. 

  25. 

  26. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 24943  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat -flame3
    27. 

  27. 27291
    28. 

  28. 

  29. /usr/share/fsl/5.0/bin/fsl_sub -T 60 -l logs -N feat4_post -j 27291  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat -poststats 1
    30. 

  30. 27547
    31. 

  31. 

  32. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 27547  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat -stop
    33. 

  33. 28241
    34. 

  34. 

  35. /usr/share/fsl/5.0/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 28241  /usr/share/fsl/5.0/bin/feat /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat/cope1.feat/design.fsf -D /data/project/studyforrest_ppa/3rd-lvl/audio-ppa_c9_z3.4.gfeat -stop
    36. 

  36. </pre><hr>Higher-level input files preparation<br><pre>
    37. 

  37. 

  38. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    39. 

  39. 

  40. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    41. 

  41. 

  42. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    43. 

  43. 

  44. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    45. 

  45. 

  46. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    47. 

  47. 

  48. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    49. 

  49. 

  50. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    51. 

  51. 

  52. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    53. 

  53. 

  54. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    55. 

  55. 

  56. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    57. 

  57. 

  58. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    59. 

  59. 

  60. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    61. 

  61. 

  62. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    63. 

  63. 

  64. /usr/share/fsl/5.0/bin/featregapply /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat
    65. 

  65. 

  66. /usr/share/fsl/5.0/bin/fslmerge -t bg_image  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/example_func
    67. 

  67. 

  68. /usr/share/fsl/5.0/bin/fslmaths bg_image -inm 1000 -Tmean bg_image -odt float
    69. 

  69. 

  70. /usr/share/fsl/5.0/bin/fslmerge -t mask  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mask
    71. 

  71. 

  72. /usr/share/fsl/5.0/bin/fslmaths mask -Tmin mask
    73. 

  73. 

  74. /usr/share/fsl/5.0/bin/fslmerge -t mean_func  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/mean_func
    75. 

  75. 

  76. /usr/share/fsl/5.0/bin/fslmaths mean_func -Tmean mean_func
    77. 

  77. 

  78. /usr/share/fsl/5.0/bin/fslmerge -t cope1  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/cope1.nii.gz
    79. 

  79. 

  80. /usr/share/fsl/5.0/bin/fslmaths cope1 -mas mask cope1
    81. 

  81. 

  82. echo 0.05971402196428571 > design.lcon
    83. 

  83. 

  84. /usr/share/fsl/5.0/bin/fslmerge -t varcope1  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/varcope1.nii.gz
    85. 

  85. 

  86. /usr/share/fsl/5.0/bin/fslmaths varcope1 -mas mask varcope1
    87. 

  87. 

  88. /usr/share/fsl/5.0/bin/fslmerge -t tdof_t1  /data/project/studyforrest_ppa/sub-01/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-02/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-03/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-04/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-05/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-06/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-09/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-14/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-15/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-16/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-17/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-18/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-19/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1 /data/project/studyforrest_ppa/sub-20/2nd-lvl_audio-ppa-grp.gfeat/cope9.feat/stats/tdof_t1
    89. 

  89. 

  90. /usr/share/fsl/5.0/bin/fslmaths tdof_t1 -mas mask tdof_t1
    91. 

  91. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>
    92.