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studyforrest-ppa-analysis
biforcado de chaeusler/studyforrest-ppa-analysis
DOI
10.12751/g-node.7is9s6
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feat4_post 9.4 KB
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  1. </pre><hr>Post-stats<br><pre>
    2. 

  2. 

  3. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
    4. 

  4. 

  5. echo 64480 > thresh_zstat1.vol
    6. 

  6. zstat1: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    7. 

  7. 

  8. /usr/share/fsl/5.0/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2
    9. 

  9. 

  10. echo 64480 > thresh_zstat2.vol
    11. 

  11. zstat2: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    12. 

  12. 

  13. /usr/share/fsl/5.0/bin/fslmaths stats/zstat3 -mas mask thresh_zstat3
    14. 

  14. 

  15. echo 64480 > thresh_zstat3.vol
    16. 

  16. zstat3: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    17. 

  17. 

  18. /usr/share/fsl/5.0/bin/fslmaths stats/zstat4 -mas mask thresh_zstat4
    19. 

  19. 

  20. echo 64480 > thresh_zstat4.vol
    21. 

  21. zstat4: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    22. 

  22. 

  23. /usr/share/fsl/5.0/bin/fslmaths stats/zstat5 -mas mask thresh_zstat5
    24. 

  24. 

  25. echo 64480 > thresh_zstat5.vol
    26. 

  26. zstat5: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    27. 

  27. 

  28. /usr/share/fsl/5.0/bin/fslmaths stats/zstat6 -mas mask thresh_zstat6
    29. 

  29. 

  30. echo 64480 > thresh_zstat6.vol
    31. 

  31. zstat6: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    32. 

  32. 

  33. /usr/share/fsl/5.0/bin/fslmaths stats/zstat7 -mas mask thresh_zstat7
    34. 

  34. 

  35. echo 64480 > thresh_zstat7.vol
    36. 

  36. zstat7: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    37. 

  37. 

  38. /usr/share/fsl/5.0/bin/fslmaths stats/zstat8 -mas mask thresh_zstat8
    39. 

  39. 

  40. echo 64480 > thresh_zstat8.vol
    41. 

  41. zstat8: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    42. 

  42. 

  43. /usr/share/fsl/5.0/bin/fslmaths stats/zstat9 -mas mask thresh_zstat9
    44. 

  44. 

  45. echo 64480 > thresh_zstat9.vol
    46. 

  46. zstat9: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    47. 

  47. 

  48. /usr/share/fsl/5.0/bin/fslmaths stats/zstat10 -mas mask thresh_zstat10
    49. 

  49. 

  50. echo 64480 > thresh_zstat10.vol
    51. 

  51. zstat10: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    52. 

  52. 

  53. /usr/share/fsl/5.0/bin/fslmaths stats/zstat11 -mas mask thresh_zstat11
    54. 

  54. 

  55. echo 64480 > thresh_zstat11.vol
    56. 

  56. zstat11: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    57. 

  57. 

  58. /usr/share/fsl/5.0/bin/fslmaths stats/zstat12 -mas mask thresh_zstat12
    59. 

  59. 

  60. echo 64480 > thresh_zstat12.vol
    61. 

  61. zstat12: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    62. 

  62. 

  63. /usr/share/fsl/5.0/bin/fslmaths stats/zstat13 -mas mask thresh_zstat13
    64. 

  64. 

  65. echo 64480 > thresh_zstat13.vol
    66. 

  66. zstat13: DLH=0.25991 VOLUME=64480 RESELS=17.7778
    67. 

  67. 

  68. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26  --olmax=lmax_zstat1.txt --scalarname=Z > cluster_zstat1.txt
    69. 

  69. 

  70. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 
    71. 

  71. 

  72. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26  --olmax=lmax_zstat2.txt --scalarname=Z > cluster_zstat2.txt
    73. 

  73. 

  74. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat2 
    75. 

  75. 

  76. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat3 -c stats/cope3 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat3 -o cluster_mask_zstat3 --connectivity=26  --olmax=lmax_zstat3.txt --scalarname=Z > cluster_zstat3.txt
    77. 

  77. 

  78. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat3 
    79. 

  79. 

  80. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat4 -c stats/cope4 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat4 -o cluster_mask_zstat4 --connectivity=26  --olmax=lmax_zstat4.txt --scalarname=Z > cluster_zstat4.txt
    81. 

  81. 

  82. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat4 
    83. 

  83. 

  84. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat5 -c stats/cope5 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat5 -o cluster_mask_zstat5 --connectivity=26  --olmax=lmax_zstat5.txt --scalarname=Z > cluster_zstat5.txt
    85. 

  85. 

  86. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat5 
    87. 

  87. 

  88. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat6 -c stats/cope6 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat6 -o cluster_mask_zstat6 --connectivity=26  --olmax=lmax_zstat6.txt --scalarname=Z > cluster_zstat6.txt
    89. 

  89. 

  90. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat6 
    91. 

  91. 

  92. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat7 -c stats/cope7 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat7 -o cluster_mask_zstat7 --connectivity=26  --olmax=lmax_zstat7.txt --scalarname=Z > cluster_zstat7.txt
    93. 

  93. 

  94. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat7 
    95. 

  95. 

  96. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat8 -c stats/cope8 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat8 -o cluster_mask_zstat8 --connectivity=26  --olmax=lmax_zstat8.txt --scalarname=Z > cluster_zstat8.txt
    97. 

  97. 

  98. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat8 
    99. 

  99. 

  100. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat9 -c stats/cope9 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat9 -o cluster_mask_zstat9 --connectivity=26  --olmax=lmax_zstat9.txt --scalarname=Z > cluster_zstat9.txt
    101. 

  101. 

  102. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat9 
    103. 

  103. 

  104. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat10 -c stats/cope10 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat10 -o cluster_mask_zstat10 --connectivity=26  --olmax=lmax_zstat10.txt --scalarname=Z > cluster_zstat10.txt
    105. 

  105. 

  106. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat10 
    107. 

  107. 

  108. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat11 -c stats/cope11 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat11 -o cluster_mask_zstat11 --connectivity=26  --olmax=lmax_zstat11.txt --scalarname=Z > cluster_zstat11.txt
    109. 

  109. 

  110. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat11 
    111. 

  111. 

  112. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat12 -c stats/cope12 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat12 -o cluster_mask_zstat12 --connectivity=26  --olmax=lmax_zstat12.txt --scalarname=Z > cluster_zstat12.txt
    113. 

  113. 

  114. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat12 
    115. 

  115. 

  116. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat13 -c stats/cope13 -t 3.4 -p 0.05 -d 0.25991 --volume=64480 --othresh=thresh_zstat13 -o cluster_mask_zstat13 --connectivity=26  --olmax=lmax_zstat13.txt --scalarname=Z > cluster_zstat13.txt
    117. 

  117. 

  118. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat13 
    119. 

  119. 

  120. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
    121. 

  121. 0.000000 0.000000 
    122. 

  122. 

  123. /usr/share/fsl/5.0/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
    124. 

  124. 0.000000 0.000000 
    125. 

  125. 

  126. /usr/share/fsl/5.0/bin/fslstats thresh_zstat3 -l 0.0001 -R 2>/dev/null
    127. 

  127. 0.000000 0.000000 
    128. 

  128. 

  129. /usr/share/fsl/5.0/bin/fslstats thresh_zstat4 -l 0.0001 -R 2>/dev/null
    130. 

  130. 0.000000 0.000000 
    131. 

  131. 

  132. /usr/share/fsl/5.0/bin/fslstats thresh_zstat5 -l 0.0001 -R 2>/dev/null
    133. 

  133. 0.000000 0.000000 
    134. 

  134. 

  135. /usr/share/fsl/5.0/bin/fslstats thresh_zstat6 -l 0.0001 -R 2>/dev/null
    136. 

  136. 0.000000 0.000000 
    137. 

  137. 

  138. /usr/share/fsl/5.0/bin/fslstats thresh_zstat7 -l 0.0001 -R 2>/dev/null
    139. 

  139. 0.000000 0.000000 
    140. 

  140. 

  141. /usr/share/fsl/5.0/bin/fslstats thresh_zstat8 -l 0.0001 -R 2>/dev/null
    142. 

  142. 0.000000 0.000000 
    143. 

  143. 

  144. /usr/share/fsl/5.0/bin/fslstats thresh_zstat9 -l 0.0001 -R 2>/dev/null
    145. 

  145. 3.407378 5.049414 
    146. 

  146. 

  147. /usr/share/fsl/5.0/bin/fslstats thresh_zstat10 -l 0.0001 -R 2>/dev/null
    148. 

  148. 3.401484 5.998966 
    149. 

  149. 

  150. /usr/share/fsl/5.0/bin/fslstats thresh_zstat11 -l 0.0001 -R 2>/dev/null
    151. 

  151. 3.400073 6.113375 
    152. 

  152. 

  153. /usr/share/fsl/5.0/bin/fslstats thresh_zstat12 -l 0.0001 -R 2>/dev/null
    154. 

  154. 3.400561 5.677560 
    155. 

  155. 

  156. /usr/share/fsl/5.0/bin/fslstats thresh_zstat13 -l 0.0001 -R 2>/dev/null
    157. 

  157. 3.400740 4.966964 
    158. 

  158. Rendering using zmin=3.400073 zmax=6.113375
    159. 

  159. 

  160. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 3.400073 6.113375 rendered_thresh_zstat1
    161. 

  161. 

  162. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png
    163. 

  163. 

  164. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
    165. 

  165. 

  166. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat2 3.400073 6.113375 rendered_thresh_zstat2
    167. 

  167. 

  168. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png
    169. 

  169. 

  170. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat3 3.400073 6.113375 rendered_thresh_zstat3
    171. 

  171. 

  172. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat3 -A 750 rendered_thresh_zstat3.png
    173. 

  173. 

  174. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat4 3.400073 6.113375 rendered_thresh_zstat4
    175. 

  175. 

  176. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat4 -A 750 rendered_thresh_zstat4.png
    177. 

  177. 

  178. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat5 3.400073 6.113375 rendered_thresh_zstat5
    179. 

  179. 

  180. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat5 -A 750 rendered_thresh_zstat5.png
    181. 

  181. 

  182. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat6 3.400073 6.113375 rendered_thresh_zstat6
    183. 

  183. 

  184. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat6 -A 750 rendered_thresh_zstat6.png
    185. 

  185. 

  186. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat7 3.400073 6.113375 rendered_thresh_zstat7
    187. 

  187. 

  188. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat7 -A 750 rendered_thresh_zstat7.png
    189. 

  189. 

  190. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat8 3.400073 6.113375 rendered_thresh_zstat8
    191. 

  191. 

  192. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat8 -A 750 rendered_thresh_zstat8.png
    193. 

  193. 

  194. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat9 3.400073 6.113375 rendered_thresh_zstat9
    195. 

  195. 

  196. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat9 -A 750 rendered_thresh_zstat9.png
    197. 

  197. 

  198. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat10 3.400073 6.113375 rendered_thresh_zstat10
    199. 

  199. 

  200. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat10 -A 750 rendered_thresh_zstat10.png
    201. 

  201. 

  202. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat11 3.400073 6.113375 rendered_thresh_zstat11
    203. 

  203. 

  204. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat11 -A 750 rendered_thresh_zstat11.png
    205. 

  205. 

  206. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat12 3.400073 6.113375 rendered_thresh_zstat12
    207. 

  207. 

  208. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat12 -A 750 rendered_thresh_zstat12.png
    209. 

  209. 

  210. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat13 3.400073 6.113375 rendered_thresh_zstat13
    211. 

  211. 

  212. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat13 -A 750 rendered_thresh_zstat13.png
    213. 

  213. 

  214. mkdir -p tsplot ; /usr/share/fsl/5.0/bin/tsplot . -f filtered_func_data -o tsplot
    215.