report_log.html 2.3 KB

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  4. <link REL=stylesheet TYPE=text/css href=.files/fsl.css>
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  6. <h2>Progress Report / Log</h2>
  7. Started at Thu 19 Mar 2020 10:40:20 AM CET<p>
  8. <pre>
  9. cp -r ../.files .files
  10. </pre><hr>Higher-level stats<br><pre>
  11. cat ../design.lcon | awk '{ print }' > design.lcon
  12. /usr/share/fsl/5.0/bin/flameo --cope=filtered_func_data --vc=var_filtered_func_data --dvc=tdof_filtered_func_data --mask=mask --ld=stats --dm=design.mat --cs=design.grp --tc=design.con --runmode=fe
  13. Log directory is: stats
  14. Setting up:
  15. ntptsing=8.000000
  16. evs_group=1.000000
  17. No f contrasts
  18. WARNING: The passed in varcope file, var_filtered_func_data, contains voxels inside the mask with zero (or negative) values. These voxels will be excluded from the analysis.
  19. nevs=1
  20. ntpts=8
  21. ngs=1
  22. nvoxels=67406
  23. Running:
  24. nmaskvoxels=67406
  25. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
  26. Saving results
  27. Log directory was: stats
  28. /bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats
  29. /usr/share/fsl/5.0/bin/smoothest -d 7 -m mask -r stats/res4d > stats/smoothness
  30. </pre><hr>Post-stats<br><pre>
  31. /usr/share/fsl/5.0/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1
  32. echo 67406 > thresh_zstat1.vol
  33. zstat1: DLH=0.238132 VOLUME=67406 RESELS=21.1738
  34. /usr/share/fsl/5.0/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 2.3 -p 0.05 -d 0.238132 --volume=67406 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt --scalarname=Z > cluster_zstat1_std.txt
  35. /usr/share/fsl/5.0/bin/cluster2html . cluster_zstat1 -std
  36. /usr/share/fsl/5.0/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
  37. 2.301050 6.521548
  38. Rendering using zmin=2.301050 zmax=6.521548
  39. /usr/share/fsl/5.0/bin/overlay 1 0 example_func -a thresh_zstat1 2.301050 6.521548 rendered_thresh_zstat1
  40. /usr/share/fsl/5.0/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png
  41. /bin/cp /usr/share/fsl/5.0/etc/luts/ramp.gif .ramp.gif
  42. </pre><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br><br></BODY></HTML>