ソースを参照

added allen sdk and brian 2 model fitting

Paul Pfeiffer 4 年 前
コミット
287cb35247
1 ファイル変更39 行追加4 行削除
  1. 39 4
      environment.yml

+ 39 - 4
environment.yml

@@ -110,7 +110,6 @@ dependencies:
   - numpy-base=1.16.2=py37hde5b4d6_0
   - openh264=1.8.0=hdbcaa40_1000
   - openssl=1.1.1d=h516909a_0
-  - pandas=0.24.2=py37he6710b0_0
   - pandoc=2.2.3.2=0
   - pandocfilters=1.4.2=py37_1
   - pango=1.40.14=he752989_2
@@ -182,27 +181,63 @@ dependencies:
   - zlib=1.2.11=h7b6447c_3
   - zstd=1.3.7=h0b5b093_0
   - pip:
+    - aiohttp==3.6.2
+    - allensdk==1.6.0
     - argparse==1.4.0
-    - bayesian-optimization==0.6.0
+    - argschema==1.17.5
+    - async-timeout==3.0.1
+    - bayesian-optimization==1.1.0
     - brian2modelfitting==0.3
+    - chardet==3.0.4
     - cma==2.7.0
     - coverage==5.0.4
     - efel==3.0.80
+    - future==0.18.2
     - genty==1.3.2
+    - glymur==0.8.19
     - greenlet==0.4.15
+    - h5py==2.10.0
+    - hdmf==1.0.2
+    - idna==2.9
+    - imageio==2.8.0
     - joblib==0.14.1
+    - marshmallow==3.0.0rc6
+    - mock==4.0.2
+    - multidict==4.7.5
     - mypy==0.770
     - mypy-extensions==0.4.3
-    - nevergrad==0.1.2
+    - nest-asyncio==1.2.0
+    - networkx==2.4
+    - nevergrad==0.3.0
     - noise==1.2.2
     - nose-timer==1.0.0
     - numexpr==2.7.1
+    - packaging==20.3
+    - pandas==0.25.3
+    - pillow==7.1.1
+    - psycopg2-binary==2.8.4
     - pyaml==20.3.1
+    - pynrrd==0.4.2
+    - pynwb==1.0.2
     - pypet==0.4.3
+    - pywavelets==1.1.1
     - pyyaml==5.3.1
+    - requests==2.23.0
+    - requests-toolbelt==0.9.1
+    - ruamel-yaml==0.16.10
+    - ruamel-yaml-clib==0.2.0
+    - scikit-build==0.10.0
+    - scikit-image==0.16.2
     - scikit-learn==0.22.2.post1
     - scikit-optimize==0.7.4
     - scoop==0.7.1.1
-    - tables==3.6.1
+    - simpleitk==1.2.4
+    - simplejson==3.17.0
+    - tables==3.5.1
     - typed-ast==1.4.1
     - typing-extensions==3.7.4.1
+    - urllib3==1.25.8
+    - xarray==0.15.1
+    - yarl==1.4.2
+prefix: /home/pfeiffer/Applications/miniconda2/envs/interneuron_polarity
+