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- # -*- coding: utf-8 -*-
- """
- Created on Wed May 30 10:13:47 2018
- @author: Giovanni Galizia
- copy of master
- in C:\\Users\\Giovanni Galizia\\Documents\\Code\\ShareWinXP\\WindowsExchange\\IDL_Data\\spont_activity\\00_copy_IDL
- changed May 2019
- to run Hanna Apis2018 as sample data
- on mac gio: run in environment idl_py
- """
- ### gio 25.5.2019: "from view.idl_translation_core import View_gr_reports " does not work,
- # direct import does: import View_gr_reports as...
- # in spyder, anaconca env idl_py, mac.
- #from view.idl_translation_core import View_gr_reports as View_gr_reports, IDL_flags as IDL_flags
- import View_gr_reports as View_gr_reports, IDL_flags as IDL_flags
- from sys import platform
- #show images inline:
- #%matplotlib inline
- #show images in extra window
- #%matplotlib qt
- def Set_my_flags(flag):
- # use this to change any flags that are important locally
- #flag.STG_reporttag = '030725bR'
- flag.LE_loadExp = 3
- flag.CSM_Movement = 0 # 2 for movement correction on the spot - is slow!
- flag.VIEW_batchmode = 1 # fo
-
- flag.LE_CalcMethod = 3900
-
- flag.VIEW_ReportMethod = 12 #10 for overviews, 12 for movies
- flag.SO_Method = 10
- flag.SO_individualScale = 3
- flag.SO_MV_scalemax = 18.0
- flag.SO_MV_scalemin = -2.0
- flag.SO_withinArea= 0
- flag.CTV_firstframe = 18
- flag.CTV_lastframe = 22
- flag.CTV_Method = 35 #22
- flag.RM_FotoOk = 1
- flag.CTV_scalebar = 1
-
- flag.Signal_FilterSpaceFlag = 0
- flag.mv_individualScale = 3
-
- return flag
- def ChooseFileFolder():
- import tkinter as tk
- from tkinter.filedialog import askopenfilenames
- # Choose raw files
- root = tk.Tk()
- root.withdraw() # so that windows closes after file chosen
- root.attributes('-topmost', True)
- # the mac system does not accept filetypes, therefore ask for system
- if platform == 'darwin':
- filenames = askopenfilenames(
- parent=root,
- title='Select one or more settings files (*.settings.xls)',
- ) # ask user to choose file
- else:
- filenames = askopenfilenames(
- parent=root,
- title='Select one or more settings files',
- filetypes=[('settings files', '*.settings.xls'), ('all files', '*')]
- ) # ask user to choose file
- return filenames
- def Apis2018_summer(flag):
- #list all animals to be processed
- flag.SO_MV_scalemax =3.000
- flag.SO_MV_scalemin = -2.000
- flag.STG_ReportTag ='HS_bee_PELM_180406a'
- (p1, flag) = gr_HS_bee_PELM_180406a(flag)
- #gr_takefromlist, 'HS_bee_PELM_180406a', 2
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180409'
- # gr_HS_bee_OXON_PELM_180409
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180409', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180411'
- # gr_HS_bee_OXON_PELM_180411
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180411', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_PELM_180416b'
- # gr_HS_bee_PELM_180416b
- # #gr_takefromlist, 'HS_bee_PELM_180416b', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180417'
- # gr_HS_bee_OXON_PELM_180417
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180417', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_PELM_180418'
- # gr_HS_bee_PELM_180418
- # #gr_takefromlist, 'HS_bee_PELM_180418', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_PELM_180424b'
- # gr_HS_bee_PELM_180424b
- # #gr_takefromlist, 'HS_bee_PELM_180424b', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180420'
- # gr_HS_bee_OXON_PELM_180420
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180420', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180427'
- # gr_HS_bee_OXON_PELM_180427
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180427', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180503'
- # gr_HS_bee_OXON_PELM_180503
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180503', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180507'
- # gr_HS_bee_OXON_PELM_180507
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180507', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180509'
- # gr_HS_bee_OXON_PELM_180509
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180509', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_PELM_180718'
- # gr_HS_bee_OXON_PELM_180718
- # #gr_takefromlist, 'HS_bee_OXON_PELM_180718', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_180716'
- # gr_HS_bee_OXON_180716
- # #gr_takefromlist, 'HS_bee_OXON_180716', 2
- #
- # flag.SO_MV_scalemax =3.000
- # flag.SO_MV_scalemin = -2.000
- # flag.stg_reporttag ='HS_bee_OXON_180727'
- # gr_HS_bee_OXON_180727
- #gr_takefromlist, 'HS_bee_OXON_180727', 2
- return p1, flag
- # end of Apis2018_summer, i.e. list of all animals
- def gr_HS_bee_PELM_180406a(flag):
- #single animal selection of order how measurements are evaluated
- flag.RM_newcolumn = 1
- ### IDL commant is this
- # subloop, '14'; 12_AIR
- ### converts into Python like this
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 21, flag, selectformat ='subloop')
- flag.RM_newcolumn = 0
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 10, flag, selectformat ='subloop') # 01_LINT-4
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 11, flag, selectformat ='subloop') # 02_LINT-3
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 23, flag, selectformat ='subloop') # 14_LINT-4
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 9, flag, selectformat ='subloop') # 00_MOL
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 22, flag, selectformat ='subloop') # 13_MOL
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 6, flag, selectformat ='subloop') # 15_NONL-3
-
- flag.RM_newcolumn = 1
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 12, flag, selectformat ='subloop') # 03_OXON-10
- flag.RM_newcolumn = 0
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 13, flag, selectformat ='subloop') # 04_OXON-9
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 14, flag, selectformat ='subloop') # 05_OXON-8
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 15, flag, selectformat ='subloop') #'; 06_OXON-7
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 16, flag, selectformat ='subloop') #'; 07_OXON-6
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 17, flag, selectformat ='subloop') #'; 08_OXON-5
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 18, flag, selectformat ='subloop') #'; 09_OXON-4
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 19, flag, selectformat ='subloop') #'; 10_OXON-3
- (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 20, flag, selectformat ='subloop') # 11_OXON-2
-
- return p1, flag
- #########################################################
- ########## Main starts here
- #########################################################
- # define flags
- #IDL.flags.IDL_default_flags sets the general rules
- #Set_my_flags modifies these
- #on my windows system
- #STG_MotherOfAllFolders = 'C:\\Users\\Giovanni Galizia\\Documents\\Code\\ShareWinXP\\WindowsExchange\\IDL_Data\\spont_activity' #if empty, working directory is used
- #if platform == 'darwin':
- # STG_MotherOfAllFolders = '/Users/galizia/Documents/Code/ShareWinXP/WindowsExchange/IDL_Data/spont_activity'
- # Hannah data on my mac
- STG_MotherOfAllFolders = '/Users/galizia/Documents/KN_Group/19_Hannah_Burger/Apis2018/Hanna_OXON-PELM_summer2018'
- flag = Set_my_flags(IDL_flags.IDL_default_flags(STG_MotherOfAllFolders))
- #flag.STG_OdorReportPath = os.path.join(STG_MotherOfAllFolders + 'IDL_output\\movies\\'
- # call program that opens .lst file and performs analysis
- # the command in spont_activity_master.pro was "subloop, '24'
- #(p1,flag) = View_gr_reports.gr_takefromlist('030725bR', 3, flag)
- ####make sure all settings/flags are set, then call this animal
- (p1,flag) = Apis2018_summer(flag)
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