run python source_to_bids

.bids-validator-config.json

@@ -0,0 +1,6 @@
+{
+    "ignore": [
+        101,
+        38
+    ]
+}

.bidsignore

@@ -0,0 +1,2 @@
+README.md
+datacite.yml

CHANGES

@@ -0,0 +1,2 @@
+1.0.0 2021-05-25
+    - Initial release

LICENSE

@@ -0,0 +1,540 @@
+## ODC Open Database License (ODbL)
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+terms of this License.

README.md

@@ -0,0 +1,61 @@
+# The `mpib_sp_eeg` dataset
+
+This is the readme of the `mpib_sp_eeg` dataset. The short dataset name results from these three facts:
+
+- the data was collected at the Max Planck Institute for Human Development (MPIB)
+- the behavioral task was the Sampling Paradigm (SP)
+- the dataset's main neuroimaging modality is electroencephalography data (EEG)
+
+The data was collected in 2019 at the MPIB in Berlin by Stefan Appelhoff and colleagues.
+
+All important details are reported in the original paper for the project: https://to.be.done/paper-doi
+
+The data is organized according to the Brain Imaging Data Structure, see: https://bids.neuroimaging.io
+
+The dataset is managed with datalad, see: http://handbook.datalad.org/en/latest/index.html
+
+## Download
+
+1. Install datalad (http://handbook.datalad.org/en/latest/intro/installation.html)
+2. Run the code below from the shell:
+    1. first "clone" the dataset
+    2. then navigate to the root of the dataset
+    3. then use `datalad get <file you want>` to get the file contents for each file you want
+       (you can also use `datalad get . -r` to get everything at once, but this may take some time)
+
+```shell
+datalad clone https://gin.g-node.org/sappelhoff/mpib_sp_eeg
+cd mpib_sp_eeg
+datalad get participants.tsv
+```
+
+## Analysis code
+
+The code used for data analysis can be found here: https://github.com/sappelhoff/sp_code
+
+## Experimental presentation code
+
+The code used for the experimental presentation can be found here: https://github.com/sappelhoff/sp_experiment
+
+Or in the archived version at Zenodo: https://doi.org/10.5281/zenodo.3354368
+
+## Contact
+
+- [Stefan Appelhoff](mailto:appelhoff@mpib-berlin.mpg.de)
+
+## License
+
+Please see the [LICENSE](LICENSE) file for details.
+
+## Additional information
+
+- The eyetracking recording for sub-18 in the ActiveVariable task is broken ("sub-18/eeg/sub-18_task-ActiveVariable_recording-eyetracking_physio.tsv.gz").
+- The eyetracking recording for sub-15 in the YokedFixed task for unknown reasons has timing issues ("sub-15/eeg/sub-15_task-YokedFixed_recording-eyetracking_physio.tsv.gz").
+- All bipolar channels (ECG, HEOG, VEOG) were recorded with a ground electrode placed 10cm away from the navel on the participant's right side of the belly.
+- The following describes the approximate locations of the ECG, HEOG, and VEOG electrodes:
+    - ECG- between the 5th and 6th rib on the left chest.
+    - ECG+ in the middle of the upper chest
+    - HEOG- 1cm from the left outer canthus
+    - HEOG+ 1cm from the right outer canthus
+    - VEOG- 2cm below the left eye
+    - VEOG+ 1cm above the left eyebrow

code/environment.yml

@@ -0,0 +1,33 @@
+name: sp
+channels:
+- defaults
+- conda-forge
+dependencies:
+- python=3.8
+- pip
+- tqdm
+- ipython
+- jupyter
+- jupyter_contrib_nbextensions
+- nbconvert<6.0
+- mkl
+- numpy
+- numba
+- scipy
+- matplotlib
+- pandas>=0.18
+- scikit-learn
+- seaborn
+- statsmodels
+- nbdime
+- flake8
+- flake8-docstrings
+- black
+- isort
+- git-annex
+- pip:
+  - rpy2
+  - datalad
+  - pingouin
+  - mne<0.23
+  - mne_bids<0.8

datacite.yml

@@ -0,0 +1,86 @@
+# Metadata for DOI registration according to DataCite Metadata Schema 4.1.
+# For detailed schema description see https://doi.org/10.5438/0014
+
+## Required fields
+
+# The main researchers involved. Include digital identifier (e.g., ORCID)
+# if possible, including the prefix to indicate its type.
+authors:
+  -
+    firstname: "Stefan"
+    lastname: "Appelhoff"
+    affiliation: "Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany"
+    id: "ORCID:0000-0001-8002-0877"
+  -
+    firstname: "Ralph"
+    lastname: "Hertwig"
+    affiliation: "Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany"
+    id: "ORCID:0000-0002-9908-9556"
+  -
+    firstname: "Bernhard"
+    lastname: "Spitzer"
+    affiliation: "Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany"
+    id: "ORCID:0000-0001-9752-932X"
+
+# A title to describe the published resource.
+title: "mpib_sp_eeg"
+
+# Additional information about the resource, e.g., a brief abstract.
+description: |
+  When acquiring information about choice alternatives, decision makers may have varying levels of control over which
+  and how much information they sample before making a choice. How does subjective control over sampling affect the
+  quality of experience-based decisions?
+  This resource contains behavioral, eyetracking, and EEG data of 40 human participants performing a
+  numerical sampling task in which the level of subjective control over sampling was systematically varied.
+  The dataset is organized according to the Brain Imaging Data Structure (BIDS).
+
+# List of keywords the resource should be associated with.
+# Give as many keywords as possible, to make the resource findable.
+keywords:
+  - cognitive neuroscience
+  - decisions from experience
+  - DFE
+  - sampling paradigm
+  - sequential sampling
+  - decision-making
+  - control
+  - EEG
+  - electroencephalography
+  - eyetracking
+  - BIDS
+  - Brain Imaging Data Structure
+
+# License information for this resource. Please provide the license name and/or a link to the license.
+# Please add also a corresponding LICENSE file to the repository.
+license:
+  name: "Open Data Commons Open Database License (ODbL) v1.0"
+  url: "https://opendatacommons.org/licenses/odbl/1-0/"
+
+## Optional Fields
+
+# Funding information for this resource.
+# Separate funder name and grant number by comma.
+funding:
+  - "Max Planck Institute for Human Development"
+
+# Related publications. reftype might be: IsSupplementTo, IsDescribedBy, IsReferencedBy.
+# Please provide digital identifier (e.g., DOI) if possible.
+# Add a prefix to the ID, separated by a colon, to indicate the source.
+# Supported sources are: DOI, arXiv, PMID
+# In the citation field, please provide the full reference, including title, authors, journal etc.
+references:
+  -
+    id: "doi:paper-doi"
+    reftype: "IsSupplementTo"
+    citation: "paper-doi-citation"
+  -
+    id: "doi:10.5281/zenodo.3361717"
+    reftype: "IsReferencedBy"
+    citation: "Stefan Appelhoff. (2019, August 6). sappelhoff/sp_experiment: v1.0 (Version v1.0). Zenodo. http://doi.org/10.5281/zenodo.3361717"
+
+# Resource type. Default is Dataset, other possible values are Software, DataPaper, Image, Text.
+resourcetype: Dataset
+
+# Do not edit or remove the following line
+templateversion: 1.2
+

dataset_description.json

@@ -0,0 +1,21 @@
+{
+    "Name": "mpib_sp_eeg",
+    "BIDSVersion": "1.6.0",
+    "DatasetType": "raw",
+    "License": "ODbL",
+    "Authors": [
+        "Stefan Appelhoff",
+        "Ralph Hertwig",
+        "Bernhard Spitzer"
+    ],
+    "Acknowledgements": "We thank Agnessa Karapetian, Clara Wicharz, Jann Wäscher, Yoonsang Lee, and Zhiqi Kang for help with data collection, and Dirk Ostwald for helpful discussions. We are grateful to Casper Kerrén for feedback on a draft of this manuscript and to Susannah Goss for editorial assistance.",
+    "HowToAcknowledge": "to be done, please cite https://to.be.done/paper-doi",
+    "EthicsApprovals": [
+        "The study was approved by the ethics committee of the Max Planck Institute for Human Development, Berlin, Germany."
+    ],
+    "ReferencesAndLinks": [
+        "https://to.be.done/paper-doi",
+        "https://doi.org/10.5281/zenodo.3354368"
+    ],
+    "DatasetDOI": "https://to.be.done/dataset-doi"
+}

derivatives/annotation_derivatives/README

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derivatives/annotation_derivatives/sub-01/sub-01_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-01/sub-01_task-ActiveFixed_annotations.txt

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derivatives/annotation_derivatives/sub-01/sub-01_task-ActiveFixed_badchannels.txt

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derivatives/annotation_derivatives/sub-01/sub-01_task-YokedFixed_annotations.txt

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derivatives/annotation_derivatives/sub-01/sub-01_task-YokedFixed_badchannels.txt

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derivatives/annotation_derivatives/sub-01/sub-01_task-description_annotations.txt

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derivatives/annotation_derivatives/sub-01/sub-01_task-description_badchannels.txt

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derivatives/annotation_derivatives/sub-02/sub-02_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-02/sub-02_task-ActiveVariable_annotations.txt

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derivatives/annotation_derivatives/sub-02/sub-02_task-ActiveVariable_badchannels.txt

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derivatives/annotation_derivatives/sub-02/sub-02_task-YokedVariable_annotations.txt

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derivatives/annotation_derivatives/sub-02/sub-02_task-YokedVariable_badchannels.txt

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derivatives/annotation_derivatives/sub-02/sub-02_task-description_annotations.txt

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derivatives/annotation_derivatives/sub-03/sub-03_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-03/sub-03_task-ActiveFixed_annotations.txt

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derivatives/annotation_derivatives/sub-04/sub-04_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-04/sub-04_task-YokedVariable_annotations.txt

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derivatives/annotation_derivatives/sub-09/sub-09_task-ActiveFixed_annotations.txt

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derivatives/annotation_derivatives/sub-09/sub-09_task-ActiveFixed_badchannels.txt

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derivatives/annotation_derivatives/sub-09/sub-09_task-YokedFixed_annotations.txt

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derivatives/annotation_derivatives/sub-09/sub-09_task-YokedFixed_badchannels.txt

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derivatives/annotation_derivatives/sub-09/sub-09_task-description_annotations.txt

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derivatives/annotation_derivatives/sub-09/sub-09_task-description_badchannels.txt

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derivatives/annotation_derivatives/sub-10/sub-10_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-10/sub-10_task-ActiveVariable_annotations.txt

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derivatives/annotation_derivatives/sub-10/sub-10_task-ActiveVariable_badchannels.txt

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derivatives/annotation_derivatives/sub-10/sub-10_task-YokedVariable_annotations.txt

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derivatives/annotation_derivatives/sub-10/sub-10_task-YokedVariable_badchannels.txt

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derivatives/annotation_derivatives/sub-10/sub-10_task-description_annotations.txt

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derivatives/annotation_derivatives/sub-10/sub-10_task-description_badchannels.txt

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derivatives/annotation_derivatives/sub-11/sub-11_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-11/sub-11_task-ActiveFixed_annotations.txt

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derivatives/annotation_derivatives/sub-11/sub-11_task-ActiveFixed_badchannels.txt

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derivatives/annotation_derivatives/sub-11/sub-11_task-YokedFixed_annotations.txt

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derivatives/annotation_derivatives/sub-11/sub-11_task-YokedFixed_badchannels.txt

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derivatives/annotation_derivatives/sub-11/sub-11_task-description_annotations.txt

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derivatives/annotation_derivatives/sub-11/sub-11_task-description_badchannels.txt

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derivatives/annotation_derivatives/sub-12/sub-12_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-12/sub-12_task-ActiveVariable_annotations.txt

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derivatives/annotation_derivatives/sub-12/sub-12_task-ActiveVariable_badchannels.txt

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derivatives/annotation_derivatives/sub-12/sub-12_task-YokedVariable_annotations.txt

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derivatives/annotation_derivatives/sub-12/sub-12_task-YokedVariable_badchannels.txt

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derivatives/annotation_derivatives/sub-12/sub-12_task-description_annotations.txt

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derivatives/annotation_derivatives/sub-12/sub-12_task-description_badchannels.txt

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derivatives/annotation_derivatives/sub-13/sub-13_concat_eeg-excluded-ica-comps.txt

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derivatives/annotation_derivatives/sub-13/sub-13_task-ActiveFixed_annotations.txt

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derivatives/annotation_derivatives/sub-13/sub-13_task-ActiveFixed_badchannels.txt

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derivatives/annotation_derivatives/sub-13/sub-13_task-YokedFixed_annotations.txt

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derivatives/annotation_derivatives/sub-13/sub-13_task-YokedFixed_badchannels.txt

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