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highspeed-glm
forkattu lähteestä lnnrtwttkhn/highspeed-glm
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10.12751/g-node.d21zpv
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DataLad dataset containing first-level GLM results used for feature selection in Wittkuhn & Schuck, 2020, Nature Communications. For details, see:

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highspeed-glm
Lennart Wittkuhn b7261e4902 add datacite.yml, LICENSE and update README.md 3 vuotta sitten
.datalad 284afd9f40 [DATALAD] new dataset 3 vuotta sitten
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l1pipeline a64f426261 add results of first-level glm for all participants after running code/glm/highspeed-glm.main.py 3 vuotta sitten
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tools @ aa2f54e1da 9412a55988 [DATALAD] Recorded changes 3 vuotta sitten
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.gitmodules 7ed92ca7a5 [DATALAD] Recorded changes 3 vuotta sitten
LICENSE b7261e4902 add datacite.yml, LICENSE and update README.md 3 vuotta sitten
README.md b7261e4902 add datacite.yml, LICENSE and update README.md 3 vuotta sitten
datacite.yml b7261e4902 add datacite.yml, LICENSE and update README.md 3 vuotta sitten
highspeed-glm.Rproj d1227b920c intial commit of code and docs 3 vuotta sitten

README.md

Highspeed GLM

Overview

This repository contains first-level GLM results used for feature selection in Wittkuhn & Schuck, 2020, Nature Communications.

Please see the paper and the project website at https://wittkuhn.mpib.berlin/highspeed/ for further details about the study. The meta-data of this dataset are available at https://github.com/lnnrtwttkhn/highspeed-glm and the data contents at https://gin.g-node.org/lnnrtwttkhn/highspeed-glm.

Dataset structure

  • All inputs (i.e. building blocks from other sources) are located in bids/, fmriprep/ and tools/
  • All custom code is located in code/
  • Results of the first-level GLM pipeline are located in l1pipeline/

Contact

License

Please see the LICENSE file for details.

datacite.yml
Title Dynamics of fMRI patterns reflect sub-second activation sequences and reveal replay in human visual cortex - First-level GLM results
Authors Wittkuhn,Lennart;Max Planck Institute for Human Development, Max Planck UCL Centre for Computational Psychiatry and Ageing Research, Berlin, Germany;ORCID:0000-0001-2345-6789
Schuck,Nicolas W.;Max Planck Institute for Human Development, Max Planck UCL Centre for Computational Psychiatry and Ageing Research, Berlin, Germany;ORCID:0000-0002-0150-8776
Description Neural computations are often fast and anatomically localized. Yet, investigating such computations in humans is challenging because non-invasive methods have either high temporal or spatial resolution, but not both. Of particular relevance, fast neural replay is known to occur throughout the brain in a coordinated fashion about which little is known. We develop a multivariate analysis method for functional magnetic resonance imaging that makes it possible to study sequentially activated neural patterns separated by less than 100 ms with precise spatial resolution. Human participants viewed images individually and sequentially with speeds up to 32 ms between items. Probabilistic pattern classifiers were trained on activation patterns in visual and ventrotemporal cortex during individual image trials. Applied to sequence trials, probabilistic classifier time courses allow the detection of neural representations and their order. Order detection remains possible at speeds up to 32 ms between items. The frequency spectrum of the sequentiality metric distinguishes between sub- versus supra-second sequences. Importantly, applied to resting-state data our method reveals fast replay of task-related stimuli in visual cortex. This indicates that non-hippocampal replay occurs even after tasks without memory requirements and shows that our method can be used to detect such spontaneously occurring replay.
License Creative Commons Attribution-ShareAlike 4.0 (https://creativecommons.org/licenses/by-sa/4.0/)
References Wittkuhn, L. and Schuck, N. W. (2020). Dynamics of fMRI patterns reflect sub-second activation sequences and reveal replay in human visual cortex. Nature Communications [] (IsSupplementTo)
Wittkuhn, L. and Schuck, N. W. (2020). Faster than thought: Detecting sub-second activation sequences with sequential fMRI pattern analysis. bioRxiv. doi:10.1101/2020.02.15.950667 [doi:10.1101/2020.02.15.950667] (IsSupplementTo)
Funding Max Planck Society, Independent Max Planck Research Group grant
European Union, ERC Starting Grant ERC-2019-StG REPLAY-852669
Max Planck Institute for Human Development
Keywords cognitive neuroscience
functional magnetic resonance imaging
hippocampal replay
Resource Type Dataset