V1_connectivity_rules_PNAS/Figures_3_4_5_Code_and_Data

Data.csv contains firing rates of units in V1 and dLGN as functions of contrast, orientation, frequency and phase, recorded by members of Laura Busse lab. To plot panels in Fig 3-5 download the folder Figures_3_4_5_Code_and_Data and follow the steps below (Matlab). If you have any questions regarding code in this folder, contact Nataliya Kraynyukova.

The folder Extract_Data_for_Code_and_Figures contains files to obtain population responses. Input is Data.csv, output is data folder. In Step1 folder, run Data_csv_to_mat.m to convert Data.csv to Data.mat. In Step2 folder, run Average_Data_wrt_freq_phase.m to compute average response of units w.r.t. frequency and phase and to save the result to folder Data_Av_wrt_freq_and_phase. In Step3 folder, run Average_Data_wrt_units.m to compute V1E, V1I and dLGN populations response as function of contrast and orientation and to save the result in folder data. The inferred SSN parameters are in folder Inference_Related_Tables.

To plot Figure panels, use corresponding .m file in the folder Panel_Plot_Related_Scripts inside of each Figure folder.