Schreyer_and_Gollisch_2021_salamander_retinal_bipolar_cell_recordings/Spot/code patterned spot/BC_mainPatternedSpot.asv

%Guide for the patterned spot analysis
%Check out the Documentation_Data.pdf, which contains relevant information
%for analysing the patterned stimulus
clear;
close all;

%% Do the patterned spot analysis
loadData='Z:\Manuscript\BC_XY_LN\Puplishing\DataAvailable\Spot\'; %path of the BC files for patterned spot (has to be adapted to your own path)
filename='18d130037Comp.mat'; %BC file to analyse: for example here we use file 16422006Comp from cell 1, recorded in retina 2 on 160422
Hz=1; % given in the excel file LogInfo_PatternedSpot.xlsx for the corresponding file
%the input frames you need, this part depends on whether you record with
%stimulus version 1 or 2 get the start and end points of each patterned spot from LogInfo_PatternedSpot.xlsx.

%% stimulus version 1
start_halfSpot=51; end_halfSpot=57;
start_quarterSpot=59; end_quarterSpot=65;
start_25microSpot=75; end_25microSpot=81;
inputFrames=[start_halfSpot,end_halfSpot,start_quarterSpot,end_quarterSpot,...
    start_25microSpot,end_25microSpot];
% %% stim version 2
% start_halfSpot=234; end_halfSpot=240;
% start_quarterSpot=243; end_quarterSpot=249;
% start_25microSpot=252; end_25microSpot=258;
% start_10microSpot=261; end_10microSpot=267;
% start_UniformSpot=225; end_UniformSpot=231;
% inputFrames=[start_halfSpot,end_halfSpot,start_quarterSpot,end_quarterSpot,...
%     start_25microSpot,end_25microSpot,start_10microSpot,end_10microSpot,...
%     start_UniformSpot,end_UniformSpot];

[patternedSpot_output]=BC_patternedSpot(loadData,filename,Hz,inputFrames);%example code to analyse the patterned spot responses