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- ====================================
- Workflow POSTFIT pRF's (matlab)
- ====================================
- These post-fitting scripts are located in the <..>/prfCode/PostFit/matlab folder
- 1 ck_Batch_Combine_MRI_SliceChunks.m
- - Uses ck_Combine_MRI_SliceChunks.m to put chunks back together
- - Takes slice chunks from <..>/FitResults/MRI/<subject>/<model>
- - Combine them
- - Save volumes in same folder
- 2 ck_CollectAllFittingResults.m
- - ck_GetMRI_pRF.m
- - combines results from 2 animals
- - Gets data from <..>/FitResults/MRI/<subject> saves data in <..>/FitResults/MRI/Combined
- - Adds D99 atlasses
- - ck_GetAtlasTable.m gets the atlas info
- - ck_GetEphys_pRF.m
- - combines results from 2 animals
- - Gets and saves data in <..>/FitResults/EPHYS
- - Combines MRI and Ephys
- - Saves as AllFits.cv1.mat in <..>/FitResults/MULTIMODAL
- 3 Run ck_BasicProc_AllFits_cv1.m
- - Takes data from <..>/FitResults/MultiModal
- - Re-structures
- - Saves back as tables and structures in <..>/FitResults/MultiModal
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- 4 ck_StatsAndPlots.m
- - Long script that creates plots and runs statistics etc
- - Uses:
- - ck_GetROIidx.m
- - get an ROI index back when querying with label
- - ck_xmod_stats.m
- - Runs the LMM for crossmodal statistics
- - ck_xmod_stats_lowfreqlfp.m
- - Runs the LMM for crossmodal statistics for pos/neg low freq lfp
- - Contains comments on where manuscript figures are generated
- ======================================
- Example pRF-fit electrode/voxel
- # Basis of Figure 1E
- ======================================
- 1 ck_ExampleVoxel.m
- - for MRI
- 2 ck_ExampleElectrode.m
- - for EPHYS
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