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- Workflow MRI pRF's
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- These pre-fitting scripts are located in the <..>/Analysis_code/MRI folder
- 1 pRF_prepdata_avg.m (batch: BATCH_pRF_PadAndUpsample.m)
- - Takes pRF_PrepDatalist_MONKEY.m as info on what preprocessed fMRI data to load
- - Creates timeseries of equal 230 volumes length by inserting NaNs
- - Saves as ses-XXXX-230vols.mat
- - In <...>/Raw_data/MRI/Raw_matlab/us-padded/<subject>/
- 2 pRF_avg_BOLD_tseries.m (batch: BATCH_pRF_avg_BOLD_tseries.m)
- - Takes the ses-XXXX-230vols.mat from <...>/Raw_data/MRI/Raw_matlab/us-padded/<subject>/
- - Creates an average timecourse per session
- - Saves as medianBOLD_sess-xxxxxx.mat
- - In <...>/Raw_data/MRI/Raw_matlab/us-padded/<subject>/
- 3 pRF_AvgSessions.m / pRF_AvgSessions_odd.m / pRF_AvgSessions_even.m
- - Takes the medianBOLD_sess-xxxxxx.mat from <...>/Raw_data/MRI/Raw_matlab/us-padded/<subject>/
- - Averages across sessions
- - Saves as AllSessions-avg.mat / AllSessions-avg-odd.mat / AllSessions-avg-even.mat
- - Copies these files to <...>/Preprocessed_data/MRI/<subject>/
- 4 pRF_prepCrossVal.m
- - Takes AllSessions-avg-odd.mat & AllSessions-avg-even.mat from <...>/Preprocessed_data/MRI/<subject>/
- - Restructures
- - Saves as AllSessions-avg-cv.mat
- - In <...>/Preprocessed_data/MRI/<subject>/
- 5 Copy <...>/Preprocessed_data/MRI/<subject>/AllSessions-avg-cv.mat to LISA <...>/PRF/Data/MRI/cv/<subject>/
- Run fits on LISA
- Copy fit results from LISA <...>/PRF/Results/ back to local <..>/FitResults/MRI/<subject>/<model>
- 6 Continue analysis in <..>/Analysis_code/PostFit
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