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doi
/
NHP-pRF
sklonowany z ChrisKlink/NHP-pRF
DOI
10.12751/g-node.2j01af
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Drzewo: 0989677dd5
Gałęzie Tagi
NHP-pRF
/
Preprocessed_data
/
manual-masks
/
sub-M02
/
atlas
/
atlas2funcspace.sh

atlas2funcspace.sh 953 B
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  1. #!/bin/bash
    2. 

  2. 

  3. if [ -f /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/atlas/D99_in_M02_adj_inFunc.nii.gz ]; then
    4. 

  4.     DATE=$( date '+%F_%H%M' )
    5. 

  5.     cp /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/atlas/D99_in_M02_adj_inFunc.nii.gz \
    6. 

  6.        /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/atlas/D99_in_M02_adj_inFunc_${DATE}.nii.gz
    7. 

  7. fi
    8. 

  8. 

  9. flirt -in /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/atlas/D99_in_M02_adj.nii.gz \
    10. 

  10.     -ref /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/func/sub-M02_ref_func_brain_res-1x1x1.nii.gz \
    11. 

  11.     -applyxfm -init /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/warps/sub-M02_anat2func.mat \
    12. 

  12.     -out /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/atlas/D99_in_M02_adj_inFunc.nii.gz -interp nearestneighbour
    13. 

  13. 

  14. gunzip /Users/chris/Dropbox/GIT_Support/NHP-BIDS/manual-masks/sub-M02/atlas/D99_in_M02_adj_inFunc.nii.gz
    15.