Chris Klink 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
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ExampleElectrode.mat 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ExampleVoxel.mat 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ReadMe.txt 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_2dPRF_ephys.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_BasicProc_AllFits_cv1.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_Batch_Combine_MRI_SliceChunks.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_CollectAllFittingResults.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_Combine_MRI_SliceChunks_cv.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_ExampleElectrode.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_ExampleVoxel.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_GetAtlasTable.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_GetEphys_pRF.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_GetMRI_pRF.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_GetROIidx.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_StatsAndPlots.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_xmod_stats.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans
ck_xmod_stats_lowfreqlfp.m 4c6918ae5b gin commit from chris-mh16 il y a 3 ans

ReadMe.txt

====================================
Workflow POSTFIT pRF's (matlab)
====================================

These post-fitting scripts are located in the <..>/prfCode/PostFit/matlab folder

1 ck_Batch_Combine_MRI_SliceChunks.m
- Uses ck_Combine_MRI_SliceChunks.m to put chunks back together
- Takes slice chunks from <..>/FitResults/MRI//
- Combine them
- Save volumes in same folder

2 ck_CollectAllFittingResults.m
- ck_GetMRI_pRF.m
- combines results from 2 animals
- Gets data from <..>/FitResults/MRI/ saves data in <..>/FitResults/MRI/Combined
- Adds D99 atlasses
- ck_GetAtlasTable.m gets the atlas info
- ck_GetEphys_pRF.m
- combines results from 2 animals
- Gets and saves data in <..>/FitResults/EPHYS
- Combines MRI and Ephys
- Saves as AllFits.cv1.mat in <..>/FitResults/MULTIMODAL

3 Run ck_BasicProc_AllFits_cv1.m
- Takes data from <..>/FitResults/MultiModal
- Re-structures
- Saves back as tables and structures in <..>/FitResults/MultiModal

4 ck_StatsAndPlots.m
- Long script that creates plots and runs statistics etc
- Uses:
- ck_GetROIidx.m
- get an ROI index back when querying with label
- ck_xmod_stats.m
- Runs the LMM for crossmodal statistics
- ck_xmod_stats_lowfreqlfp.m
- Runs the LMM for crossmodal statistics for pos/neg low freq lfp
- Contains comments on where manuscript figures are generated





======================================
Example pRF-fit electrode/voxel
# Basis of Figure 1E
======================================

1 ck_ExampleVoxel.m
- for MRI

2 ck_ExampleElectrode.m
- for EPHYS
datacite.yml
Title Population receptive fields in non-human primates from whole-brain fMRI and large-scale neurophysiology in visual cortex.
Authors Klink,Chris;Netherlands Institute for Neuroscience;ORCID:0000-0002-6784-7842
Chen,Xing;Netherlands Institute for Neuroscience
Vanduffel,Wim;KU Leuven;ORCID:0000-0002-9399-343X
Roelfsema,Pieter;Netherlands Institute for Neuroscience;ORCID:0000-0002-1625-0034
Description This data-set contains all data and code for the paper 'Population receptive fields in non-human primates from whole-brain fMRI and large-scale neurophysiology in visual cortex.'
License Creative Commons CC0 1.0 Public Domain Dedication (https://creativecommons.org/publicdomain/zero/1.0/)
References Direct comparison of population receptive fields from fMRI and large-scale neurophysiological recordings in awake non-human primates. (2020) P. Christiaan Klink, Xing Chen, Wim Vanduffel, Pieter R. Roelfsema; bioRxiv 2020.09.05.284133; doi: https://doi.org/10.1101/2020.09.05.284133 [doi:10.1101/2020.09.05.284133] (IsSupplementTo)
Funding NWO, Crossover Program 17619 'INTENSE'
NWO, STW-Perspectief P15-42 'NESTOR'
NWO, VENI 451.13.023
EU FP7, ERC-339490 'Cortic_al_gorithms'
EU, Human Brain Project (agreements 720270 and 748 785907, SGA1 and SGA2)
Friends Foundation of the Netherlands Institute for Neuroscience
Keywords Neuroscience
Neuroimaging
Neurophysiology
Non-human primate
Population receptive field
Resource Type Dataset