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Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

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doi
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NHP-pRF
forked from ChrisKlink/NHP-pRF
DOI
10.12751/g-node.2j01af
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NHP-pRF
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Analysis_code
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PostFit
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matlab
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ReadMe.txt

ReadMe.txt 1.6 KB
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  1. ====================================
    2. 

  2. Workflow POSTFIT pRF's (matlab)
    3. 

  3. ====================================
    4. 

  4. 

  5. These post-fitting scripts are located in the <..>/prfCode/PostFit/matlab folder
    6. 

  6. 

  7. 1	ck_Batch_Combine_MRI_SliceChunks.m
    8. 

  8. 	- Uses ck_Combine_MRI_SliceChunks.m to put chunks back together
    9. 

  9. 	- Takes slice chunks from <..>/FitResults/MRI/<subject>/<model>
    10. 

  10. 	- Combine them
    11. 

  11. 	- Save volumes in same folder
    12. 

  12. 

  13. 2	ck_CollectAllFittingResults.m
    14. 

  14. 	- ck_GetMRI_pRF.m
    15. 

  15. 		- combines results from 2 animals
    16. 

  16. 		- Gets data from <..>/FitResults/MRI/<subject> saves data in <..>/FitResults/MRI/Combined
    17. 

  17. 		- Adds D99 atlasses
    18. 

  18. 			- ck_GetAtlasTable.m gets the atlas info
    19. 

  19. 	- ck_GetEphys_pRF.m
    20. 

  20. 		- combines results from 2 animals
    21. 

  21. 		- Gets and saves data in <..>/FitResults/EPHYS
    22. 

  22.  	- Combines MRI and Ephys
    23. 

  23.  	- Saves as AllFits.cv1.mat in <..>/FitResults/MULTIMODAL
    24. 

  24. 

  25. 3	Run ck_BasicProc_AllFits_cv1.m
    26. 

  26. 	- Takes data from <..>/FitResults/MultiModal	
    27. 

  27. 	- Re-structures
    28. 

  28. 	- Saves back as tables and structures in <..>/FitResults/MultiModal
    29. 

  29. 		
    30. 

  30. 4	ck_StatsAndPlots.m
    31. 

  31. 	- Long script that creates plots and runs statistics etc
    32. 

  32. 	- Uses: 
    33. 

  33. 		- ck_GetROIidx.m
    34. 

  34. 			- get an ROI index back when querying with label
    35. 

  35. 		- ck_xmod_stats.m 
    36. 

  36. 			- Runs the LMM for crossmodal statistics
    37. 

  37.         - ck_xmod_stats_lowfreqlfp.m 
    38. 

  38. 			- Runs the LMM for crossmodal statistics for pos/neg low freq lfp
    39. 

  39.     - Contains comments on where manuscript figures are generated
    40. 

  40. 

  41. 

  42. 

  43. 

  44. 

  45. ======================================
    46. 

  46. Example pRF-fit electrode/voxel
    47. 

  47. # Basis of Figure 1E 
    48. 

  48. ======================================
    49. 

  49. 

  50. 1	ck_ExampleVoxel.m
    51. 

  51.     - for MRI 
    52. 

  52. 

  53. 2	ck_ExampleElectrode.m
    54. 

  54.     - for EPHYS
    55.